1 HisKA#1
263-329 aa · 67 aa · 13.3% of protein
Raw token
HisKA:263:0.000000000000904:329:67:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
RS896_RS09025
Histidine kinase, Classic
Bifidobacterium longum · GCF_033658185
ClassHKTypeClassicLength502 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_033658185#RS896_RS09025Stable P2CS identifier used across views.
GenomeGCF_033658185Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length502 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage178 / 502 aa (35.5%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa502 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
392-502 aa · 111 aa · 22.1% of protein
Raw token
HATPase_c:392:0.0000000000000419:502:111:109- Raw architecture: HisKA:263:0.000000000000904:329:67:64#HATPase_c:392:0.0000000000000419:502:111:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_033658185::NZ_JAWWQR010000016.1::G00012
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span111940-114119Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_033658185::NZ_JAWWQR010000016.1::G00012Context members
RS896_RS09020RS896_RS09025
Partner locus tags
RS896_RS09020RS896_RS09025
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_234895662.1Primary protein accession used for annex mappings.
UniProt accessionA0A8U0KU76Primary UniProt accession resolved in the annex database.
UniProt IDA0A8U0KU76_BIFLIDisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagRS896_RS09025Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JAWWQR010000016.1Sequence record reported by the local genomic context database.
Genomic interval112 611-114 119 nt1 509 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span111 940-114 119 ntGCF_033658185::NZ_JAWWQR010000016.1::G00012
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_033658185::NZ_JAWWQR010000016.1::G00012Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAWWQR010000016.1All displayed genes belong to this local TCS context.
Neighborhood span111 940-114 119 nt2 180 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
111 940 nt114 119 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
RS896_RS09020GCF_033658185#RS896_RS09020
RROmpR
111 940-112 614 nt · Forward (+)
RS896_RS09025GCF_033658185#RS896_RS09025
HKClassicCurrent focus
112 611-114 119 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_033344585#RS864_RS09655Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1466629
Simplified PFAM architecture for HKOC_1466629
PFAM domain coverage: 168 / 502 aa (33.5%)
1 aa502 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[264-329] | HATPase_c[393-494]
- Domain count: 2
- Matched identifier: HKOC_1466629
- Positioned domains: HisKA 264-329 ; HATPase_c 393-494
Cluster members and taxonomy
Representative gene: GCF_033344585#RS864_RS09655
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 216 816 · GCF_033658185
AssemblyASM3365818v1 · Scaffoldhaploid
Genome composition2 573 051 bp · 59,5% GCBifidobacterium longum
Signal transduction countsGenes 33 · HK 13 · RR 18CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key