1 HAMP#1
127-198 aa · 72 aa · 16.8% of protein
Raw token
HAMP:127:0.0000731:198:72:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
RS868_RS04985
Histidine kinase, Classic
Bifidobacterium longum · GCF_033658055
ClassHKTypeClassicLength429 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_033658055#RS868_RS04985Stable P2CS identifier used across views.
GenomeGCF_033658055Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length429 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage248 / 429 aa (57.8%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation3 items
2 HisKA#2
209-274 aa · 66 aa · 15.4% of protein
Raw token
HisKA:209:0.00000000000000312:274:66:643 HATPase_c#3
319-428 aa · 110 aa · 25.6% of protein
Raw token
HATPase_c:319:2.53e-21:428:110:109- Raw architecture: HAMP:127:0.0000731:198:72:69#HisKA:209:0.00000000000000312:274:66:64#HATPase_c:319:2.53e-21:428:110:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_033658055::NZ_JAWWQN010000002.1::G00005
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span400229-402243Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_033658055::NZ_JAWWQN010000002.1::G00005Context members
RS868_RS04985RS868_RS04990
Partner locus tags
RS868_RS04985RS868_RS04990
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_234884771.1Primary protein accession used for annex mappings.
UniProt accessionA0A564W021Primary UniProt accession resolved in the annex database.
UniProt IDA0A564W021_BIFLIDisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagRS868_RS04985Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JAWWQN010000002.1Sequence record reported by the local genomic context database.
Genomic interval400 229-401 518 nt1 290 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span400 229-402 243 ntGCF_033658055::NZ_JAWWQN010000002.1::G00005
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_033658055::NZ_JAWWQN010000002.1::G00005Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAWWQN010000002.1All displayed genes belong to this local TCS context.
Neighborhood span400 229-402 243 nt2 015 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
400 229 nt402 243 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
RS868_RS04985GCF_033658055#RS868_RS04985
HKClassicCurrent focus
400 229-401 518 nt · Reverse (-)
RS868_RS04990GCF_033658055#RS868_RS04990
RROmpR
401 578-402 243 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_033344535#RS929_RS04350Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2185257
Simplified PFAM architecture for HKOC_2185257
PFAM domain coverage: 174 / 429 aa (40.6%)
1 aa429 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[209-272] | HATPase_c[319-428]
- Domain count: 2
- Matched identifier: HKOC_2185257
- Positioned domains: HisKA 209-272 ; HATPase_c 319-428
Cluster members and taxonomy
Representative gene: GCF_033344535#RS929_RS04350
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 216 816 · GCF_033658055
AssemblyASM3365805v1 · Contighaploid
Genome composition2 783 170 bp · 60,0% GCBifidobacterium longum
Signal transduction countsGenes 38 · HK 14 · RR 20CheA 0 · PP 4
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key