1 Response_reg#1
46-152 aa · 107 aa · 41.0% of protein
Raw token
Response_reg:46:1.77e-29:152:108:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
RS922_RS00060
Response regulator, AmiR_NasR family
Bifidobacterium longum · GCF_033658025
ClassRRTypeAmiR_NasRLength261 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_033658025#RS922_RS00060Stable P2CS identifier used across views.
GenomeGCF_033658025Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
Response_regANTAR
Protein length261 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage156 / 261 aa (59.8%)Merged over positioned domains only.
Domain description1 Response_reg,1 ANTARSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa261 aa
Domain-by-domain annotation2 items
2 ANTAR#2
199-247 aa · 49 aa · 18.8% of protein
Raw token
ANTAR:199:3.81e-17:247:49:49- Raw architecture: Response_reg:46:1.77e-29:152:108:111#ANTAR:199:3.81e-17:247:49:49
- Domain description: 1 Response_reg,1 ANTAR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_033658025::NZ_JAWWQO010000001.1::G00002
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span12975-13760Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_033658025::NZ_JAWWQO010000001.1::G00002Context members
RS922_RS00060
Partner locus tags
RS922_RS00060
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_136500329.1Primary protein accession used for annex mappings.
UniProt accessionA0A4S5BKX2Primary UniProt accession resolved in the annex database.
UniProt IDA0A4S5BKX2_BIFLIDisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagRS922_RS00060Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JAWWQO010000001.1Sequence record reported by the local genomic context database.
Genomic interval12 975-13 760 nt786 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span12 975-13 760 ntGCF_033658025::NZ_JAWWQO010000001.1::G00002
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_033658025::NZ_JAWWQO010000001.1::G00002Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAWWQO010000001.1All displayed genes belong to this local TCS context.
Neighborhood span12 975-13 760 nt786 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
12 975 nt13 760 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
RS922_RS00060GCF_033658025#RS922_RS00060
RRAmiR_NasRCurrent focus
12 975-13 760 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_004803425#E6L38_RS03645Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + ANTAR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0649694
Simplified PFAM architecture for RROC_0649694
PFAM domain coverage: 161 / 261 aa (61.7%)
1 aa261 aa
Response_regANTAR
- Simplified architecture: Response_reg + ANTAR
- Raw architecture: Response_reg[46-153] | ANTAR[195-247]
- Domain count: 2
- Matched identifier: RROC_0649694
- Positioned domains: Response_reg 46-153 ; Response_reg 46-153 ; ANTAR 195-247 ; ANTAR 195-247
Cluster members and taxonomy
Representative gene: GCF_004803425#E6L38_RS03645
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 216 816 · GCF_033658025
AssemblyASM3365802v1 · Contighaploid
Genome composition2 645 579 bp · 59,5% GCBifidobacterium longum
Signal transduction countsGenes 42 · HK 14 · RR 23CheA 0 · PP 5
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key