1 HisKA_3#1
244-302 aa · 59 aa · 7.2% of protein
Raw token
HisKA_3:244:0.0000000000000066:302:59:68P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
RS894_RS00910
Histidine kinase, Classic
Bifidobacterium longum · GCF_033657955
ClassHKTypeClassicLength818 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_033657955#RS894_RS00910Stable P2CS identifier used across views.
GenomeGCF_033657955Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
HisKA_3HATPase_c
Protein length818 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage224 / 818 aa (27.4%)Merged over positioned domains only.
Domain description2 HisKA_3,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa818 aa
Domain-by-domain annotation3 items
2 HATPase_c#2
345-438 aa · 94 aa · 11.5% of protein
Raw token
HATPase_c:345:0.000000000000148:438:110:1093 HisKA_3#3
694-764 aa · 71 aa · 8.7% of protein
Raw token
HisKA_3:694:0.0000367:764:71:68- Raw architecture: HisKA_3:244:0.0000000000000066:302:59:68#HATPase_c:345:0.000000000000148:438:110:109#HisKA_3:694:0.0000367:764:71:68
- Domain description: 2 HisKA_3,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_033657955::NZ_JAWWQK010000001.1::G00002
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span181912-185280Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_033657955::NZ_JAWWQK010000001.1::G00002Context members
RS894_RS00910RS894_RS00915
Partner locus tags
RS894_RS00910RS894_RS00915
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_144098551.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagRS894_RS00910Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JAWWQK010000001.1Sequence record reported by the local genomic context database.
Genomic interval181 912-184 368 nt2 457 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span181 912-185 280 ntGCF_033657955::NZ_JAWWQK010000001.1::G00002
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_033657955::NZ_JAWWQK010000001.1::G00002Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAWWQK010000001.1All displayed genes belong to this local TCS context.
Neighborhood span181 912-185 280 nt3 369 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
181 912 nt185 280 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
RS894_RS00910GCF_033657955#RS894_RS00910
HKClassicCurrent focus
181 912-184 368 nt · Forward (+)
RS894_RS00915GCF_033657955#RS894_RS00915
RRNarL
184 390-185 280 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_033657865#RS668_RS08725Use this link to inspect the representative gene detail.
PFAM architectureDUF7134 + HisKA_3 + HATPase_c + DUF71344 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0532312
Simplified PFAM architecture for HKOC_0532312
PFAM domain coverage: 413 / 818 aa (50.5%)
1 aa818 aa
DUF7134HisKA_3HATPase_cDUF7134
- Simplified architecture: DUF7134 + HisKA_3 + HATPase_c + DUF7134
- Raw architecture: DUF7134[13-138] | HisKA_3[244-305] | HATPase_c[345-437] | DUF7134[485-616]
- Domain count: 4
- Matched identifier: HKOC_0532312
- Positioned domains: DUF7134 13-138 ; HisKA_3 244-305 ; HATPase_c 345-437 ; DUF7134 485-616
Cluster members and taxonomy
Representative gene: GCF_033657865#RS668_RS08725
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 216 816 · GCF_033657955
AssemblyASM3365795v1 · Contighaploid
Genome composition2 711 077 bp · 60,0% GCBifidobacterium longum
Signal transduction countsGenes 41 · HK 13 · RR 23CheA 0 · PP 5
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key