1 Response_reg#1
28-128 aa · 101 aa · 41.2% of protein
Raw token
Response_reg:28:0.0000000000000302:128:101:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
RS668_RS11480
Response regulator NarL family
Bifidobacterium longum · GCF_033657865
ClassRRTypeNarLLength245 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_033657865#RS668_RS11480Stable P2CS identifier used across views.
GenomeGCF_033657865Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
Response_regHTH_LUXR
Protein length245 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage157 / 245 aa (64.1%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_LUXRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa245 aa
Domain-by-domain annotation2 items
2 HTH_LUXR#2
183-238 aa · 56 aa · 22.9% of protein
Raw token
HTH_LUXR:183:4.94e-16:238:56:58- Raw architecture: Response_reg:28:0.0000000000000302:128:101:111#HTH_LUXR:183:4.94e-16:238:56:58
- Domain description: 1 Response_reg,1 HTH_LUXR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_033657865::NZ_JAWWQH010000053.1::G00021
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span8820-9557Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_033657865::NZ_JAWWQH010000053.1::G00021Context members
RS668_RS11480
Partner locus tags
RS668_RS11480
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_144098883.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagRS668_RS11480Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JAWWQH010000053.1Sequence record reported by the local genomic context database.
Genomic interval8 820-9 557 nt738 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span8 820-9 557 ntGCF_033657865::NZ_JAWWQH010000053.1::G00021
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_033657865::NZ_JAWWQH010000053.1::G00021Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAWWQH010000053.1All displayed genes belong to this local TCS context.
Neighborhood span8 820-9 557 nt738 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
8 820 nt9 557 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
RS668_RS11480GCF_033657865#RS668_RS11480
RRNarLCurrent focus
8 820-9 557 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_033657865#RS668_RS11480The current gene is the representative for this cluster.
PFAM architectureResponse_reg + GerE2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0800093
Simplified PFAM architecture for RROC_0800093
PFAM domain coverage: 157 / 245 aa (64.1%)
1 aa245 aa
Response_regGerE
- Simplified architecture: Response_reg + GerE
- Raw architecture: Response_reg[28-129] | GerE[184-238]
- Domain count: 2
- Matched identifier: RROC_0800093
- Positioned domains: Response_reg 28-129 ; GerE 184-238
Cluster members and taxonomy
Representative gene: GCF_033657865#RS668_RS11480
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 216 816 · GCF_033657865
AssemblyASM3365786v1 · Contighaploid
Genome composition2 692 014 bp · 60,0% GCBifidobacterium longum
Signal transduction countsGenes 41 · HK 13 · RR 23CheA 0 · PP 5
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key