1 Response_reg#1
4-113 aa · 110 aa · 48.2% of protein
Raw token
Response_reg:4:9.94e-31:113:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
RS668_RS03345
Response regulator OmpR family
Bifidobacterium longum · GCF_033657865
ClassRRTypeOmpRLength228 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_033657865#RS668_RS03345Stable P2CS identifier used across views.
GenomeGCF_033657865Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length228 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage185 / 228 aa (81.1%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa228 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
150-224 aa · 75 aa · 32.9% of protein
Raw token
Trans_reg_C:150:3.15e-29:224:75:77- Raw architecture: Response_reg:4:9.94e-31:113:111:111#Trans_reg_C:150:3.15e-29:224:75:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_033657865::NZ_JAWWQH010000016.1::G00008
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span66360-68092Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_033657865::NZ_JAWWQH010000016.1::G00008Context members
RS668_RS03340RS668_RS03345
Partner locus tags
RS668_RS03340RS668_RS03345
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_060620621.1Primary protein accession used for annex mappings.
UniProt accessionA0A0M4LGZ5Primary UniProt accession resolved in the annex database.
UniProt IDA0A0M4LGZ5_BIFLIDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagRS668_RS03345Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JAWWQH010000016.1Sequence record reported by the local genomic context database.
Genomic interval67 406-68 092 nt687 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span66 360-68 092 ntGCF_033657865::NZ_JAWWQH010000016.1::G00008
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_033657865::NZ_JAWWQH010000016.1::G00008Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAWWQH010000016.1All displayed genes belong to this local TCS context.
Neighborhood span66 360-68 092 nt1 733 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
66 360 nt68 092 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
RS668_RS03340GCF_033657865#RS668_RS03340
HKClassic
66 360-67 397 nt · Reverse (-)
RS668_RS03345GCF_033657865#RS668_RS03345
RROmpRCurrent focus
67 406-68 092 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001281305#RY67_RS05520Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1307815
Simplified PFAM architecture for RROC_1307815
PFAM domain coverage: 183 / 228 aa (80.3%)
1 aa228 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[4-112] | Trans_reg_C[150-223]
- Domain count: 2
- Matched identifier: RROC_1307815
- Positioned domains: Response_reg 4-112 ; Response_reg 4-112 ; Trans_reg_C 150-223 ; Trans_reg_C 150-223
Cluster members and taxonomy
Representative gene: GCF_001281305#RY67_RS05520
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 216 816 · GCF_033657865
AssemblyASM3365786v1 · Contighaploid
Genome composition2 692 014 bp · 60,0% GCBifidobacterium longum
Signal transduction countsGenes 41 · HK 13 · RR 23CheA 0 · PP 5
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key