1 HisKA#1
123-188 aa · 66 aa · 19.1% of protein
Raw token
HisKA:123:0.000000003:188:66:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
RS668_RS03340
Histidine kinase, Classic
Bifidobacterium longum · GCF_033657865
ClassHKTypeClassicLength345 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_033657865#RS668_RS03340Stable P2CS identifier used across views.
GenomeGCF_033657865Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length345 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage170 / 345 aa (49.3%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa345 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
234-337 aa · 104 aa · 30.1% of protein
Raw token
HATPase_c:234:5.74e-29:337:104:109- Raw architecture: HisKA:123:0.000000003:188:66:64#HATPase_c:234:5.74e-29:337:104:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_033657865::NZ_JAWWQH010000016.1::G00008
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span66360-68092Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_033657865::NZ_JAWWQH010000016.1::G00008Context members
RS668_RS03340RS668_RS03345
Partner locus tags
RS668_RS03340RS668_RS03345
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_144098855.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagRS668_RS03340Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JAWWQH010000016.1Sequence record reported by the local genomic context database.
Genomic interval66 360-67 397 nt1 038 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span66 360-68 092 ntGCF_033657865::NZ_JAWWQH010000016.1::G00008
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_033657865::NZ_JAWWQH010000016.1::G00008Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAWWQH010000016.1All displayed genes belong to this local TCS context.
Neighborhood span66 360-68 092 nt1 733 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
66 360 nt68 092 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
RS668_RS03340GCF_033657865#RS668_RS03340
HKClassicCurrent focus
66 360-67 397 nt · Reverse (-)
RS668_RS03345GCF_033657865#RS668_RS03345
RROmpR
67 406-68 092 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_033657865#RS668_RS03340The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2821657
Simplified PFAM architecture for HKOC_2821657
PFAM domain coverage: 170 / 345 aa (49.3%)
1 aa345 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[125-188] | HATPase_c[234-339]
- Domain count: 2
- Matched identifier: HKOC_2821657
- Positioned domains: HisKA 125-188 ; HATPase_c 234-339
Cluster members and taxonomy
Representative gene: GCF_033657865#RS668_RS03340
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 216 816 · GCF_033657865
AssemblyASM3365786v1 · Contighaploid
Genome composition2 692 014 bp · 60,0% GCBifidobacterium longum
Signal transduction countsGenes 41 · HK 13 · RR 23CheA 0 · PP 5
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key