1 Response_reg#1
384-496 aa · 113 aa · 19.0% of protein
Raw token
Response_reg:384:1.37e-26:496:113:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
RS668_RS00755
Response regulator, unclassified
Bifidobacterium longum · GCF_033657865
ClassRRTypeunclassifiedLength596 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_033657865#RS668_RS00755Stable P2CS identifier used across views.
GenomeGCF_033657865Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
Response_regGerE
Protein length596 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage163 / 596 aa (27.3%)Merged over positioned domains only.
Domain description1 Response_reg,1 GerESummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation2 items
2 GerE#2
542-591 aa · 50 aa · 8.4% of protein
Raw token
GerE:542:0.00000000206:591:50:57- Raw architecture: Response_reg:384:1.37e-26:496:113:111#GerE:542:0.00000000206:591:50:57
- Domain description: 1 Response_reg,1 GerE
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_033657865::NZ_JAWWQH010000003.1::G00001
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span54846-56636Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_033657865::NZ_JAWWQH010000003.1::G00001Context members
RS668_RS00755
Partner locus tags
RS668_RS00755
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_234884632.1Primary protein accession used for annex mappings.
UniProt accessionA0A564VCB5Primary UniProt accession resolved in the annex database.
UniProt IDA0A564VCB5_BIFLIDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagRS668_RS00755Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JAWWQH010000003.1Sequence record reported by the local genomic context database.
Genomic interval54 846-56 636 nt1 791 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span54 846-56 636 ntGCF_033657865::NZ_JAWWQH010000003.1::G00001
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_033657865::NZ_JAWWQH010000003.1::G00001Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAWWQH010000003.1All displayed genes belong to this local TCS context.
Neighborhood span54 846-56 636 nt1 791 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
54 846 nt56 636 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
RS668_RS00755GCF_033657865#RS668_RS00755
RRunclassifiedCurrent focus
54 846-56 636 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_033657865#RS668_RS00755The current gene is the representative for this cluster.
PFAM architectureResponse_reg + GerE2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0044697
Simplified PFAM architecture for RROC_0044697
PFAM domain coverage: 157 / 596 aa (26.3%)
1 aa596 aa
Response_regGerE
- Simplified architecture: Response_reg + GerE
- Raw architecture: Response_reg[384-495] | GerE[546-590]
- Domain count: 2
- Matched identifier: RROC_0044697
- Positioned domains: Response_reg 384-495 ; GerE 546-590
Cluster members and taxonomy
Representative gene: GCF_033657865#RS668_RS00755
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 216 816 · GCF_033657865
AssemblyASM3365786v1 · Contighaploid
Genome composition2 692 014 bp · 60,0% GCBifidobacterium longum
Signal transduction countsGenes 41 · HK 13 · RR 23CheA 0 · PP 5
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key