1 Response_reg#1
22-134 aa · 113 aa · 48.3% of protein
Raw token
Response_reg:22:0.00000000000000163:134:114:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
SCX11_RS07375
Response regulator NarL family
Bifidobacterium longum · GCF_033549985
ClassRRTypeNarLLength234 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_033549985#SCX11_RS07375Stable P2CS identifier used across views.
GenomeGCF_033549985Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
Response_regHTH_LUXR
Protein length234 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage169 / 234 aa (72.2%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_LUXRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa234 aa
Domain-by-domain annotation2 items
2 HTH_LUXR#2
172-227 aa · 56 aa · 23.9% of protein
Raw token
HTH_LUXR:172:0.00000000000858:227:56:58- Raw architecture: Response_reg:22:0.00000000000000163:134:114:111#HTH_LUXR:172:0.00000000000858:227:56:58
- Domain description: 1 Response_reg,1 HTH_LUXR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_033549985::NZ_JAWUDK010000014.1::G00009
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span1317-2021Genomic interval covered by the local TCS group.
Identifiers
Old locus tagSCX11_07375RefSeq proteinWP_242668890.1
Context group ID
GCF_033549985::NZ_JAWUDK010000014.1::G00009Context members
SCX11_RS07375
Partner locus tags
SCX11_RS07375
Partner old locus tags
SCX11_07375
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_242668890.1Primary protein accession used for annex mappings.
UniProt accessionA0A4V6N8J5Primary UniProt accession resolved in the annex database.
UniProt IDA0A4V6N8J5_BIFLLDisplay identifier provided by UniProt.
GO / PubMed3 / 1Unique GO terms and literature references available below.
Reference hubs
GO terms
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagSCX11_RS07375Primary locus identifier stored in the genes table.
Old locus tagSCX11_07375Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAWUDK010000014.1Sequence record reported by the local genomic context database.
Genomic interval1 317-2 021 nt705 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span1 317-2 021 ntGCF_033549985::NZ_JAWUDK010000014.1::G00009
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_033549985::NZ_JAWUDK010000014.1::G00009Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAWUDK010000014.1All displayed genes belong to this local TCS context.
Neighborhood span1 317-2 021 nt705 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 317 nt2 021 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
SCX11_RS07375GCF_033549985#SCX11_RS07375
RRNarLCurrent focus
1 317-2 021 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_033659285#RS913_RS01555Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + GerE2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0600460
Simplified PFAM architecture for RROC_0600460
PFAM domain coverage: 168 / 278 aa (60.4%)
1 aa278 aa
Response_regGerE
- Simplified architecture: Response_reg + GerE
- Raw architecture: Response_reg[65-177] | GerE[217-271]
- Domain count: 2
- Matched identifier: RROC_0600460
- Positioned domains: Response_reg 65-177 ; GerE 217-271
Cluster members and taxonomy
Representative gene: GCF_033659285#RS913_RS01555
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 216 816 · GCF_033549985
AssemblyASM3354998v1 · Contighaploid
Genome composition2 579 485 bp · 60,0% GCBifidobacterium longum
Signal transduction countsGenes 19 · HK 9 · RR 9CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key