1 HisKA_3#1
211-274 aa · 64 aa · 14.3% of protein
Raw token
HisKA_3:211:0.0000000000000615:274:64:68P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
SCX11_RS05325
Histidine kinase, Classic
Bifidobacterium longum · GCF_033549985
ClassHKTypeClassicLength446 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_033549985#SCX11_RS05325Stable P2CS identifier used across views.
GenomeGCF_033549985Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
HisKA_3HATPase_c
Protein length446 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage183 / 446 aa (41.0%)Merged over positioned domains only.
Domain description1 HisKA_3,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation2 items
2 HATPase_c#2
321-439 aa · 119 aa · 26.7% of protein
Raw token
HATPase_c:321:0.000000101:439:120:109- Raw architecture: HisKA_3:211:0.0000000000000615:274:64:68#HATPase_c:321:0.000000101:439:120:109
- Domain description: 1 HisKA_3,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_033549985::NZ_JAWUDK010000008.1::G00005
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span10932-12925Genomic interval covered by the local TCS group.
Identifiers
Old locus tagSCX11_05325RefSeq proteinWP_117650843.1
Context group ID
GCF_033549985::NZ_JAWUDK010000008.1::G00005Context members
SCX11_RS05320SCX11_RS05325
Partner locus tags
SCX11_RS05320SCX11_RS05325
Partner old locus tags
SCX11_05320SCX11_05325
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_117650843.1Primary protein accession used for annex mappings.
UniProt accessionA0AAW9CGL6Primary UniProt accession resolved in the annex database.
UniProt IDA0AAW9CGL6_BIFLNDisplay identifier provided by UniProt.
GO / PubMed4 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagSCX11_RS05325Primary locus identifier stored in the genes table.
Old locus tagSCX11_05325Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAWUDK010000008.1Sequence record reported by the local genomic context database.
Genomic interval11 585-12 925 nt1 341 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span10 932-12 925 ntGCF_033549985::NZ_JAWUDK010000008.1::G00005
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_033549985::NZ_JAWUDK010000008.1::G00005Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAWUDK010000008.1All displayed genes belong to this local TCS context.
Neighborhood span10 932-12 925 nt1 994 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
10 932 nt12 925 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
SCX11_RS05320GCF_033549985#SCX11_RS05320
RRNarL
10 932-11 585 nt · Reverse (-)
SCX11_RS05325GCF_033549985#SCX11_RS05325
HKClassicCurrent focus
11 585-12 925 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003436505#DXD37_RS03380Use this link to inspect the representative gene detail.
PFAM architectureHisKA_31 domain in the representative PFAM annotation.
PFAM architecture for HKOC_2013377
Simplified PFAM architecture for HKOC_2013377
PFAM domain coverage: 66 / 446 aa (14.8%)
1 aa446 aa
HisKA_3
- Simplified architecture: HisKA_3
- Raw architecture: HisKA_3[211-276]
- Domain count: 1
- Matched identifier: HKOC_2013377
- Positioned domains: HisKA_3 211-276
Cluster members and taxonomy
Representative gene: GCF_003436505#DXD37_RS03380
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 216 816 · GCF_033549985
AssemblyASM3354998v1 · Contighaploid
Genome composition2 579 485 bp · 60,0% GCBifidobacterium longum
Signal transduction countsGenes 19 · HK 9 · RR 9CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key