1 Response_reg#1
9-112 aa · 104 aa · 47.3% of protein
Raw token
Response_reg:9:0.00000000000000118:112:105:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
RS658_RS08415
Response regulator NarL family
Bifidobacterium longum · GCF_033344655
ClassRRTypeNarLLength220 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_033344655#RS658_RS08415Stable P2CS identifier used across views.
GenomeGCF_033344655Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
Response_regHTH_LUXR
Protein length220 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage157 / 220 aa (71.4%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_LUXRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa220 aa
Domain-by-domain annotation2 items
2 HTH_LUXR#2
160-212 aa · 53 aa · 24.1% of protein
Raw token
HTH_LUXR:160:6.68e-22:212:53:58- Raw architecture: Response_reg:9:0.00000000000000118:112:105:111#HTH_LUXR:160:6.68e-22:212:53:58
- Domain description: 1 Response_reg,1 HTH_LUXR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_033344655::NZ_JAWLRD010000010.1::G00023
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span103394-104056Genomic interval covered by the local TCS group.
Identifiers
Old locus tagRS658_08415RefSeq proteinWP_012576912.1
Context group ID
GCF_033344655::NZ_JAWLRD010000010.1::G00023Context members
RS658_RS08415
Partner locus tags
RS658_RS08415
Partner old locus tags
RS658_08415
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_012576912.1Primary protein accession used for annex mappings.
UniProt accessionB7GP03Primary UniProt accession resolved in the annex database.
UniProt IDB7GP03_BIFLSDisplay identifier provided by UniProt.
GO / PubMed3 / 1Unique GO terms and literature references available below.
Reference hubs
GO terms
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagRS658_RS08415Primary locus identifier stored in the genes table.
Old locus tagRS658_08415Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAWLRD010000010.1Sequence record reported by the local genomic context database.
Genomic interval103 394-104 056 nt663 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span103 394-104 056 ntGCF_033344655::NZ_JAWLRD010000010.1::G00023
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_033344655::NZ_JAWLRD010000010.1::G00023Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAWLRD010000010.1All displayed genes belong to this local TCS context.
Neighborhood span103 394-104 056 nt663 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
103 394 nt104 056 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
RS658_RS08415GCF_033344655#RS658_RS08415
RRNarLCurrent focus
103 394-104 056 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000020425#BLON_RS02545Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + GerE2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1722785
Simplified PFAM architecture for RROC_1722785
PFAM domain coverage: 159 / 220 aa (72.3%)
1 aa220 aa
Response_regGerE
- Simplified architecture: Response_reg + GerE
- Raw architecture: Response_reg[9-113] | GerE[159-212]
- Domain count: 2
- Matched identifier: RROC_1722785
- Positioned domains: Response_reg 9-113 ; Response_reg 9-113 ; GerE 159-212 ; GerE 159-212
Cluster members and taxonomy
Representative gene: GCF_000020425#BLON_RS02545
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 216 816 · GCF_033344655
AssemblyASM3334465v1 · Contighaploid
Genome composition2 591 793 bp · 59,5% GCBifidobacterium longum
Signal transduction countsGenes 41 · HK 14 · RR 23CheA 0 · PP 4
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key