1 Response_reg#1
4-113 aa · 110 aa · 48.2% of protein
Raw token
Response_reg:4:6.34e-31:113:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
RS864_RS03135
Response regulator OmpR family
Bifidobacterium longum · GCF_033344585
ClassRRTypeOmpRLength228 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_033344585#RS864_RS03135Stable P2CS identifier used across views.
GenomeGCF_033344585Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length228 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage185 / 228 aa (81.1%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa228 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
150-224 aa · 75 aa · 32.9% of protein
Raw token
Trans_reg_C:150:1.72e-28:224:75:77- Raw architecture: Response_reg:4:6.34e-31:113:111:111#Trans_reg_C:150:1.72e-28:224:75:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_033344585::NZ_JAWLRC010000006.1::G00005
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span7651-9383Genomic interval covered by the local TCS group.
Identifiers
Old locus tagRS864_03135RefSeq proteinWP_174773490.1
Context group ID
GCF_033344585::NZ_JAWLRC010000006.1::G00005Context members
RS864_RS03135RS864_RS03140
Partner locus tags
RS864_RS03135RS864_RS03140
Partner old locus tags
RS864_03135RS864_03140
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_174773490.1Primary protein accession used for annex mappings.
UniProt accessionA0A8U0KUQ6Primary UniProt accession resolved in the annex database.
UniProt IDA0A8U0KUQ6_BIFLIDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagRS864_RS03135Primary locus identifier stored in the genes table.
Old locus tagRS864_03135Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAWLRC010000006.1Sequence record reported by the local genomic context database.
Genomic interval7 651-8 337 nt687 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span7 651-9 383 ntGCF_033344585::NZ_JAWLRC010000006.1::G00005
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_033344585::NZ_JAWLRC010000006.1::G00005Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAWLRC010000006.1All displayed genes belong to this local TCS context.
Neighborhood span7 651-9 383 nt1 733 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
7 651 nt9 383 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
RS864_RS03135GCF_033344585#RS864_RS03135
RROmpRCurrent focus
7 651-8 337 nt · Forward (+)
RS864_RS03140GCF_033344585#RS864_RS03140
HKClassic
8 346-9 383 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_033344535#RS929_RS10250Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1335968
Simplified PFAM architecture for RROC_1335968
PFAM domain coverage: 183 / 228 aa (80.3%)
1 aa228 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[4-112] | Trans_reg_C[150-223]
- Domain count: 2
- Matched identifier: RROC_1335968
- Positioned domains: Response_reg 4-112 ; Trans_reg_C 150-223
Cluster members and taxonomy
Representative gene: GCF_033344535#RS929_RS10250
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 216 816 · GCF_033344585
AssemblyASM3334458v1 · Scaffoldhaploid
Genome composition2 586 960 bp · 59,5% GCBifidobacterium longum
Signal transduction countsGenes 33 · HK 13 · RR 18CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key