1 Response_reg#1
13-113 aa · 101 aa · 43.9% of protein
Raw token
Response_reg:13:0.0000000000000296:113:101:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
RS864_RS03050
Response regulator NarL family
Bifidobacterium longum · GCF_033344585
ClassRRTypeNarLLength230 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_033344585#RS864_RS03050Stable P2CS identifier used across views.
GenomeGCF_033344585Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
Response_regHTH_LUXR
Protein length230 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage157 / 230 aa (68.3%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_LUXRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa230 aa
Domain-by-domain annotation2 items
2 HTH_LUXR#2
168-223 aa · 56 aa · 24.3% of protein
Raw token
HTH_LUXR:168:8.83e-16:223:56:58- Raw architecture: Response_reg:13:0.0000000000000296:113:101:111#HTH_LUXR:168:8.83e-16:223:56:58
- Domain description: 1 Response_reg,1 HTH_LUXR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_033344585::NZ_JAWLRC010000005.1::G00004
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span29324-30016Genomic interval covered by the local TCS group.
Identifiers
Old locus tagRS864_03050RefSeq proteinWP_231837876.1
Context group ID
GCF_033344585::NZ_JAWLRC010000005.1::G00004Context members
RS864_RS03050
Partner locus tags
RS864_RS03050
Partner old locus tags
RS864_03050
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_231837876.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagRS864_RS03050Primary locus identifier stored in the genes table.
Old locus tagRS864_03050Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAWLRC010000005.1Sequence record reported by the local genomic context database.
Genomic interval29 324-30 016 nt693 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span29 324-30 016 ntGCF_033344585::NZ_JAWLRC010000005.1::G00004
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_033344585::NZ_JAWLRC010000005.1::G00004Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAWLRC010000005.1All displayed genes belong to this local TCS context.
Neighborhood span29 324-30 016 nt693 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
29 324 nt30 016 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
RS864_RS03050GCF_033344585#RS864_RS03050
RRNarLCurrent focus
29 324-30 016 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001686105#BAD15_RS08210Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + GerE2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0791890
Simplified PFAM architecture for RROC_0791890
PFAM domain coverage: 157 / 245 aa (64.1%)
1 aa245 aa
Response_regGerE
- Simplified architecture: Response_reg + GerE
- Raw architecture: Response_reg[28-129] | GerE[184-238]
- Domain count: 2
- Matched identifier: RROC_0791890
- Positioned domains: Response_reg 28-129 ; Response_reg 28-129 ; GerE 184-238 ; GerE 184-238
Cluster members and taxonomy
Representative gene: GCF_001686105#BAD15_RS08210
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 216 816 · GCF_033344585
AssemblyASM3334458v1 · Scaffoldhaploid
Genome composition2 586 960 bp · 59,5% GCBifidobacterium longum
Signal transduction countsGenes 33 · HK 13 · RR 18CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key