1 Response_reg#1
15-127 aa · 113 aa · 48.9% of protein
Raw token
Response_reg:15:3.52e-27:127:113:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
RS864_RS03000
Response regulator NarL family
Bifidobacterium longum · GCF_033344585
ClassRRTypeNarLLength231 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_033344585#RS864_RS03000Stable P2CS identifier used across views.
GenomeGCF_033344585Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
Response_regHTH_LUXR
Protein length231 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage171 / 231 aa (74.0%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_LUXRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa231 aa
Domain-by-domain annotation2 items
2 HTH_LUXR#2
167-224 aa · 58 aa · 25.1% of protein
Raw token
HTH_LUXR:167:4.59e-18:224:58:58- Raw architecture: Response_reg:15:3.52e-27:127:113:111#HTH_LUXR:167:4.59e-18:224:58:58
- Domain description: 1 Response_reg,1 HTH_LUXR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_033344585::NZ_JAWLRC010000005.1::G00003
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span18466-20333Genomic interval covered by the local TCS group.
Identifiers
Old locus tagRS864_03000RefSeq proteinWP_198940783.1
Context group ID
GCF_033344585::NZ_JAWLRC010000005.1::G00003Context members
RS864_RS02995RS864_RS03000
Partner locus tags
RS864_RS02995RS864_RS03000
Partner old locus tags
RS864_02995RS864_03000
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_198940783.1Primary protein accession used for annex mappings.
UniProt accessionA0A0M3T615Primary UniProt accession resolved in the annex database.
UniProt IDA0A0M3T615_BIFLIDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagRS864_RS03000Primary locus identifier stored in the genes table.
Old locus tagRS864_03000Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAWLRC010000005.1Sequence record reported by the local genomic context database.
Genomic interval19 638-20 333 nt696 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span18 466-20 333 ntGCF_033344585::NZ_JAWLRC010000005.1::G00003
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_033344585::NZ_JAWLRC010000005.1::G00003Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAWLRC010000005.1All displayed genes belong to this local TCS context.
Neighborhood span18 466-20 333 nt1 868 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
18 466 nt20 333 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
RS864_RS02995GCF_033344585#RS864_RS02995
HKClassic
18 466-19 644 nt · Forward (+)
RS864_RS03000GCF_033344585#RS864_RS03000
RRNarLCurrent focus
19 638-20 333 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001281305#RY67_RS05320Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + GerE2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1162558
Simplified PFAM architecture for RROC_1162558
PFAM domain coverage: 168 / 231 aa (72.7%)
1 aa231 aa
Response_regGerE
- Simplified architecture: Response_reg + GerE
- Raw architecture: Response_reg[15-127] | GerE[170-224]
- Domain count: 2
- Matched identifier: RROC_1162558
- Positioned domains: Response_reg 15-127 ; Response_reg 15-127 ; GerE 170-224 ; GerE 170-224
Cluster members and taxonomy
Representative gene: GCF_001281305#RY67_RS05320
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 216 816 · GCF_033344585
AssemblyASM3334458v1 · Scaffoldhaploid
Genome composition2 586 960 bp · 59,5% GCBifidobacterium longum
Signal transduction countsGenes 33 · HK 13 · RR 18CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key