1 Response_reg#1
6-83 aa · 78 aa · 34.5% of protein
Raw token
Response_reg:6:0.0000000000000231:83:78:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
RS890_RS10520
Response regulator, unclassified
Bifidobacterium longum · GCF_033344545
ClassRRTypeunclassifiedLength226 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_033344545#RS890_RS10520Stable P2CS identifier used across views.
GenomeGCF_033344545Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
Response_reg
Protein length226 aaLength used to scale native and Biotite-like views.
Annotated domains11 with usable coordinates.
Domain coverage78 / 226 aa (34.5%)Merged over positioned domains only.
Domain description1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa226 aa
Domain-by-domain annotation1 item
- Raw architecture: Response_reg:6:0.0000000000000231:83:78:111
- Domain description: 1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_033344545::NZ_JAWLRA010000001.1::G00006
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span368520-369200Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_033344545::NZ_JAWLRA010000001.1::G00006Context members
RS890_RS10520
Partner locus tags
RS890_RS10520
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_186289833.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagRS890_RS10520Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JAWLRA010000001.1Sequence record reported by the local genomic context database.
Genomic interval368 520-369 200 nt681 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span368 520-369 200 ntGCF_033344545::NZ_JAWLRA010000001.1::G00006
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_033344545::NZ_JAWLRA010000001.1::G00006Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAWLRA010000001.1All displayed genes belong to this local TCS context.
Neighborhood span368 520-369 200 nt681 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
368 520 nt369 200 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
RS890_RS10520GCF_033344545#RS890_RS10520
RRunclassifiedCurrent focus
368 520-369 200 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_033344545#RS890_RS10520The current gene is the representative for this cluster.
PFAM architectureResponse_reg1 domain in the representative PFAM annotation.
PFAM architecture for RROC_1443151
Simplified PFAM architecture for RROC_1443151
PFAM domain coverage: 82 / 226 aa (36.3%)
1 aa226 aa
Response_reg
- Simplified architecture: Response_reg
- Raw architecture: Response_reg[6-87]
- Domain count: 1
- Matched identifier: RROC_1443151
- Positioned domains: Response_reg 6-87
Cluster members and taxonomy
Representative gene: GCF_033344545#RS890_RS10520
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 216 816 · GCF_033344545
AssemblyASM3334454v1 · Contighaploid
Genome composition2 394 640 bp · 59,5% GCBifidobacterium longum
Signal transduction countsGenes 28 · HK 12 · RR 15CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key