1 Response_reg#1
4-109 aa · 106 aa · 44.5% of protein
Raw token
Response_reg:4:4.72e-18:109:109:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
RS890_RS07500
Response regulator LytTR family
Bifidobacterium longum · GCF_033344545
ClassRRTypeLytTRLength238 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_033344545#RS890_RS07500Stable P2CS identifier used across views.
GenomeGCF_033344545Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length238 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage192 / 238 aa (80.7%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa238 aa
Domain-by-domain annotation2 items
2 LytTR#2
139-224 aa · 86 aa · 36.1% of protein
Raw token
LytTR:139:1.3e-20:224:91:98- Raw architecture: Response_reg:4:4.72e-18:109:109:111#LytTR:139:1.3e-20:224:91:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_033344545::NZ_JAWLRA010000032.1::G00012
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span186275-186991Genomic interval covered by the local TCS group.
Identifiers
Old locus tagRS890_07515RefSeq proteinWP_144169677.1
Context group ID
GCF_033344545::NZ_JAWLRA010000032.1::G00012Context members
RS890_RS07500
Partner locus tags
RS890_RS07500
Partner old locus tags
RS890_07515
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_144169677.1Primary protein accession used for annex mappings.
UniProt accessionA0A6N2QUQ1Primary UniProt accession resolved in the annex database.
UniProt IDA0A6N2QUQ1_BIFLNDisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagRS890_RS07500Primary locus identifier stored in the genes table.
Old locus tagRS890_07515Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAWLRA010000032.1Sequence record reported by the local genomic context database.
Genomic interval186 275-186 991 nt717 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span186 275-186 991 ntGCF_033344545::NZ_JAWLRA010000032.1::G00012
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_033344545::NZ_JAWLRA010000032.1::G00012Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAWLRA010000032.1All displayed genes belong to this local TCS context.
Neighborhood span186 275-186 991 nt717 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
186 275 nt186 991 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
RS890_RS07500GCF_033344545#RS890_RS07500
RRLytTRCurrent focus
186 275-186 991 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_033344545#RS890_RS07500The current gene is the representative for this cluster.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0952576
Simplified PFAM architecture for RROC_0952576
PFAM domain coverage: 195 / 238 aa (81.9%)
1 aa238 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[4-112] | LytTR[139-224]
- Domain count: 2
- Matched identifier: RROC_0952576
- Positioned domains: Response_reg 4-112 ; LytTR 139-224
Cluster members and taxonomy
Representative gene: GCF_033344545#RS890_RS07500
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 216 816 · GCF_033344545
AssemblyASM3334454v1 · Contighaploid
Genome composition2 394 640 bp · 59,5% GCBifidobacterium longum
Signal transduction countsGenes 28 · HK 12 · RR 15CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key