1 Response_reg#1
25-136 aa · 112 aa · 46.9% of protein
Raw token
Response_reg:25:3.98e-27:136:112:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
RS890_RS05320
Response regulator NarL family
Bifidobacterium longum · GCF_033344545
ClassRRTypeNarLLength239 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_033344545#RS890_RS05320Stable P2CS identifier used across views.
GenomeGCF_033344545Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
Response_regHTH_LUXR
Protein length239 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage169 / 239 aa (70.7%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_LUXRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa239 aa
Domain-by-domain annotation2 items
2 HTH_LUXR#2
174-230 aa · 57 aa · 23.8% of protein
Raw token
HTH_LUXR:174:5.35e-16:230:58:58- Raw architecture: Response_reg:25:3.98e-27:136:112:111#HTH_LUXR:174:5.35e-16:230:58:58
- Domain description: 1 Response_reg,1 HTH_LUXR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_033344545::NZ_JAWLRA010000012.1::G00007
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span241242-243228Genomic interval covered by the local TCS group.
Identifiers
Old locus tagRS890_05335RefSeq proteinWP_144169513.1
Context group ID
GCF_033344545::NZ_JAWLRA010000012.1::G00007Context members
RS890_RS05315RS890_RS05320
Partner locus tags
RS890_RS05315RS890_RS05320
Partner old locus tags
RS890_05330RS890_05335
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_144169513.1Primary protein accession used for annex mappings.
UniProt accessionA0AB35S779Primary UniProt accession resolved in the annex database.
UniProt IDA0AB35S779_BIFLNDisplay identifier provided by UniProt.
GO / PubMed4 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagRS890_RS05320Primary locus identifier stored in the genes table.
Old locus tagRS890_05335Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAWLRA010000012.1Sequence record reported by the local genomic context database.
Genomic interval242 509-243 228 nt720 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span241 242-243 228 ntGCF_033344545::NZ_JAWLRA010000012.1::G00007
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_033344545::NZ_JAWLRA010000012.1::G00007Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAWLRA010000012.1All displayed genes belong to this local TCS context.
Neighborhood span241 242-243 228 nt1 987 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
241 242 nt243 228 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
RS890_RS05315GCF_033344545#RS890_RS05315
HKClassic
241 242-242 474 nt · Forward (+)
RS890_RS05320GCF_033344545#RS890_RS05320
RRNarLCurrent focus
242 509-243 228 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_033344545#RS890_RS05320The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Sigma70_r4_22 domains in the representative PFAM annotation.
PFAM architecture for RROC_0924173
Simplified PFAM architecture for RROC_0924173
PFAM domain coverage: 165 / 239 aa (69.0%)
1 aa239 aa
Response_regSigma70_r4_2
- Simplified architecture: Response_reg + Sigma70_r4_2
- Raw architecture: Response_reg[23-136] | Sigma70_r4_2[168-218]
- Domain count: 2
- Matched identifier: RROC_0924173
- Positioned domains: Response_reg 23-136 ; Sigma70_r4_2 168-218
Cluster members and taxonomy
Representative gene: GCF_033344545#RS890_RS05320
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 216 816 · GCF_033344545
AssemblyASM3334454v1 · Contighaploid
Genome composition2 394 640 bp · 59,5% GCBifidobacterium longum
Signal transduction countsGenes 28 · HK 12 · RR 15CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key