1 HAMP#1
57-127 aa · 71 aa · 19.9% of protein
Raw token
HAMP:57:1.15e-18:127:71:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
RS890_RS01050
Histidine kinase, Classic
Bifidobacterium longum · GCF_033344545
ClassHKTypeClassicLength357 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_033344545#RS890_RS01050Stable P2CS identifier used across views.
GenomeGCF_033344545Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length357 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage247 / 357 aa (69.2%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa357 aa
Domain-by-domain annotation3 items
2 HisKA#2
131-195 aa · 65 aa · 18.2% of protein
Raw token
HisKA:131:6.18e-16:195:65:643 HATPase_c#3
240-350 aa · 111 aa · 31.1% of protein
Raw token
HATPase_c:240:2.41e-22:350:112:109- Raw architecture: HAMP:57:1.15e-18:127:71:69#HisKA:131:6.18e-16:195:65:64#HATPase_c:240:2.41e-22:350:112:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_033344545::NZ_JAWLRA010000001.1::G00002
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span232188-233983Genomic interval covered by the local TCS group.
Identifiers
Old locus tagRS890_01055RefSeq proteinWP_186289829.1
Context group ID
GCF_033344545::NZ_JAWLRA010000001.1::G00002Context members
RS890_RS01050RS890_RS01055
Partner locus tags
RS890_RS01050RS890_RS01055
Partner old locus tags
RS890_01055RS890_01060
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_186289829.1Primary protein accession used for annex mappings.
UniProt accessionA0A6N2U3N5Primary UniProt accession resolved in the annex database.
UniProt IDA0A6N2U3N5_BIFLNDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagRS890_RS01050Primary locus identifier stored in the genes table.
Old locus tagRS890_01055Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAWLRA010000001.1Sequence record reported by the local genomic context database.
Genomic interval232 188-233 261 nt1 074 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span232 188-233 983 ntGCF_033344545::NZ_JAWLRA010000001.1::G00002
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_033344545::NZ_JAWLRA010000001.1::G00002Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAWLRA010000001.1All displayed genes belong to this local TCS context.
Neighborhood span232 188-233 983 nt1 796 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
232 188 nt233 983 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
RS890_RS01050GCF_033344545#RS890_RS01050
HKClassicCurrent focus
232 188-233 261 nt · Reverse (-)
RS890_RS01055GCF_033344545#RS890_RS01055
RROmpR
233 261-233 983 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_033344545#RS890_RS01050The current gene is the representative for this cluster.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2768699
Simplified PFAM architecture for HKOC_2768699
PFAM domain coverage: 231 / 357 aa (64.7%)
1 aa357 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[73-126] | HisKA[131-195] | HATPase_c[240-351]
- Domain count: 3
- Matched identifier: HKOC_2768699
- Positioned domains: HAMP 73-126 ; HisKA 131-195 ; HATPase_c 240-351
Cluster members and taxonomy
Representative gene: GCF_033344545#RS890_RS01050
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 216 816 · GCF_033344545
AssemblyASM3334454v1 · Contighaploid
Genome composition2 394 640 bp · 59,5% GCBifidobacterium longum
Signal transduction countsGenes 28 · HK 12 · RR 15CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key