1 Response_reg#1
15-127 aa · 113 aa · 48.9% of protein
Raw token
Response_reg:15:6.06e-27:127:113:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
RS929_RS10335
Response regulator NarL family
Bifidobacterium longum · GCF_033344535
ClassRRTypeNarLLength231 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_033344535#RS929_RS10335Stable P2CS identifier used across views.
GenomeGCF_033344535Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
Response_regHTH_LUXR
Protein length231 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage171 / 231 aa (74.0%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_LUXRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa231 aa
Domain-by-domain annotation2 items
2 HTH_LUXR#2
167-224 aa · 58 aa · 25.1% of protein
Raw token
HTH_LUXR:167:5.21e-18:224:58:58- Raw architecture: Response_reg:15:6.06e-27:127:113:111#HTH_LUXR:167:5.21e-18:224:58:58
- Domain description: 1 Response_reg,1 HTH_LUXR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_033344535::NZ_JAWLQZ010000032.1::G00022
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span4577-6444Genomic interval covered by the local TCS group.
Identifiers
Old locus tagRS929_10335RefSeq proteinWP_250231647.1
Context group ID
GCF_033344535::NZ_JAWLQZ010000032.1::G00022Context members
RS929_RS10335RS929_RS10340
Partner locus tags
RS929_RS10335RS929_RS10340
Partner old locus tags
RS929_10335RS929_10340
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_250231647.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagRS929_RS10335Primary locus identifier stored in the genes table.
Old locus tagRS929_10335Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAWLQZ010000032.1Sequence record reported by the local genomic context database.
Genomic interval4 577-5 272 nt696 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span4 577-6 444 ntGCF_033344535::NZ_JAWLQZ010000032.1::G00022
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_033344535::NZ_JAWLQZ010000032.1::G00022Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAWLQZ010000032.1All displayed genes belong to this local TCS context.
Neighborhood span4 577-6 444 nt1 868 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
4 577 nt6 444 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
RS929_RS10335GCF_033344535#RS929_RS10335
RRNarLCurrent focus
4 577-5 272 nt · Reverse (-)
RS929_RS10340GCF_033344535#RS929_RS10340
HKClassic
5 266-6 444 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_033344535#RS929_RS10335The current gene is the representative for this cluster.
PFAM architectureResponse_reg + GerE2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1184908
Simplified PFAM architecture for RROC_1184908
PFAM domain coverage: 168 / 231 aa (72.7%)
1 aa231 aa
Response_regGerE
- Simplified architecture: Response_reg + GerE
- Raw architecture: Response_reg[15-127] | GerE[170-224]
- Domain count: 2
- Matched identifier: RROC_1184908
- Positioned domains: Response_reg 15-127 ; GerE 170-224
Cluster members and taxonomy
Representative gene: GCF_033344535#RS929_RS10335
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 216 816 · GCF_033344535
AssemblyASM3334453v1 · Contighaploid
Genome composition2 586 656 bp · 59,5% GCBifidobacterium longum
Signal transduction countsGenes 41 · HK 14 · RR 23CheA 0 · PP 4
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key