1 HisKA_3#1
210-271 aa · 62 aa · 14.4% of protein
Raw token
HisKA_3:210:0.000000000000992:271:65:68P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
RS929_RS04195
Histidine kinase, Classic
Bifidobacterium longum · GCF_033344535
ClassHKTypeClassicLength430 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_033344535#RS929_RS04195Stable P2CS identifier used across views.
GenomeGCF_033344535Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
HisKA_3HATPase_c
Protein length430 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage148 / 430 aa (34.4%)Merged over positioned domains only.
Domain description1 HisKA_3,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa430 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
330-415 aa · 86 aa · 20.0% of protein
Raw token
HATPase_c:330:0.0000000000465:415:98:109- Raw architecture: HisKA_3:210:0.000000000000992:271:65:68#HATPase_c:330:0.0000000000465:415:98:109
- Domain description: 1 HisKA_3,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_033344535::NZ_JAWLQZ010000005.1::G00012
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span87422-89390Genomic interval covered by the local TCS group.
Identifiers
Old locus tagRS929_04195RefSeq proteinWP_250230763.1
Context group ID
GCF_033344535::NZ_JAWLQZ010000005.1::G00012Context members
RS929_RS04190RS929_RS04195
Partner locus tags
RS929_RS04190RS929_RS04195
Partner old locus tags
RS929_04190RS929_04195
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_250230763.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagRS929_RS04195Primary locus identifier stored in the genes table.
Old locus tagRS929_04195Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAWLQZ010000005.1Sequence record reported by the local genomic context database.
Genomic interval88 098-89 390 nt1 293 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span87 422-89 390 ntGCF_033344535::NZ_JAWLQZ010000005.1::G00012
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_033344535::NZ_JAWLQZ010000005.1::G00012Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAWLQZ010000005.1All displayed genes belong to this local TCS context.
Neighborhood span87 422-89 390 nt1 969 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
87 422 nt89 390 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
RS929_RS04190GCF_033344535#RS929_RS04190
RRNarL
87 422-88 105 nt · Reverse (-)
RS929_RS04195GCF_033344535#RS929_RS04195
HKClassicCurrent focus
88 098-89 390 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_033344535#RS929_RS04195The current gene is the representative for this cluster.
PFAM architectureHisKA_3 + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2176783
Simplified PFAM architecture for HKOC_2176783
PFAM domain coverage: 156 / 430 aa (36.3%)
1 aa430 aa
HisKA_3HATPase_c
- Simplified architecture: HisKA_3 + HATPase_c
- Raw architecture: HisKA_3[213-274] | HATPase_c[324-417]
- Domain count: 2
- Matched identifier: HKOC_2176783
- Positioned domains: HisKA_3 213-274 ; HATPase_c 324-417
Cluster members and taxonomy
Representative gene: GCF_033344535#RS929_RS04195
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 216 816 · GCF_033344535
AssemblyASM3334453v1 · Contighaploid
Genome composition2 586 656 bp · 59,5% GCBifidobacterium longum
Signal transduction countsGenes 41 · HK 14 · RR 23CheA 0 · PP 4
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key