1 HisKA#1
245-309 aa · 65 aa · 13.9% of protein
Raw token
HisKA:245:0.00000000000202:309:65:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
SBH86_RS09015
Histidine kinase, Classic
Clostridioides difficile · GCF_033240165
ClassHKTypeClassicLength466 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_033240165#SBH86_RS09015Stable P2CS identifier used across views.
GenomeGCF_033240165Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length466 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage174 / 466 aa (37.3%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa466 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
356-464 aa · 109 aa · 23.4% of protein
Raw token
HATPase_c:356:1.45e-19:464:109:109- Raw architecture: HisKA:245:0.00000000000202:309:65:64#HATPase_c:356:1.45e-19:464:109:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_033240165::NZ_BTDI01000022.1::G00028
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span47428-48819Genomic interval covered by the local TCS group.
Identifiers
Old locus tagJSCD11_18230RefSeq proteinWP_095926936.1
Context group ID
GCF_033240165::NZ_BTDI01000022.1::G00028Context members
SBH86_RS09015
Partner locus tags
SBH86_RS09015
Partner old locus tags
JSCD11_18230
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_095926936.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagSBH86_RS09015Primary locus identifier stored in the genes table.
Old locus tagJSCD11_18230Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_BTDI01000022.1Sequence record reported by the local genomic context database.
Genomic interval47 428-48 819 nt1 392 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span47 428-48 819 ntGCF_033240165::NZ_BTDI01000022.1::G00028
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_033240165::NZ_BTDI01000022.1::G00028Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_BTDI01000022.1All displayed genes belong to this local TCS context.
Neighborhood span47 428-48 819 nt1 392 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
47 428 nt48 819 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
SBH86_RS09015GCF_033240165#SBH86_RS09015
HKClassicCurrent focus
47 428-48 819 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_002303425#BGU60_RS11555Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1763867
Simplified PFAM architecture for HKOC_1763867
PFAM domain coverage: 174 / 466 aa (37.3%)
1 aa466 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[245-309] | HATPase_c[356-464]
- Domain count: 2
- Matched identifier: HKOC_1763867
- Positioned domains: HisKA 245-309 ; HATPase_c 356-464
Cluster members and taxonomy
Representative gene: GCF_002303425#BGU60_RS11555
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_033240165
AssemblyASM3324016v1 · Contighaploid
Genome composition4 003 039 bp · 28,5% GCClostridioides difficile
Signal transduction countsGenes 104 · HK 51 · RR 53CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key