1 Response_reg#1
4-114 aa · 111 aa · 47.0% of protein
Raw token
Response_reg:4:2.38e-19:114:114:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
SBH86_RS07925
Response regulator LytTR family
Clostridioides difficile · GCF_033240165
ClassRRTypeLytTRLength236 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_033240165#SBH86_RS07925Stable P2CS identifier used across views.
GenomeGCF_033240165Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length236 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage199 / 236 aa (84.3%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa236 aa
Domain-by-domain annotation2 items
2 LytTR#2
140-227 aa · 88 aa · 37.3% of protein
Raw token
LytTR:140:1.14e-24:227:93:98- Raw architecture: Response_reg:4:2.38e-19:114:114:111#LytTR:140:1.14e-24:227:93:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_033240165::NZ_BTDI01000018.1::G00022
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span47911-48621Genomic interval covered by the local TCS group.
Identifiers
Old locus tagJSCD11_15970RefSeq proteinWP_077744896.1
Context group ID
GCF_033240165::NZ_BTDI01000018.1::G00022Context members
SBH86_RS07925
Partner locus tags
SBH86_RS07925
Partner old locus tags
JSCD11_15970
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_077744896.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagSBH86_RS07925Primary locus identifier stored in the genes table.
Old locus tagJSCD11_15970Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_BTDI01000018.1Sequence record reported by the local genomic context database.
Genomic interval47 911-48 621 nt711 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span47 911-48 621 ntGCF_033240165::NZ_BTDI01000018.1::G00022
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_033240165::NZ_BTDI01000018.1::G00022Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_BTDI01000018.1All displayed genes belong to this local TCS context.
Neighborhood span47 911-48 621 nt711 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
47 911 nt48 621 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
SBH86_RS07925GCF_033240165#SBH86_RS07925
RRLytTRCurrent focus
47 911-48 621 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_002303425#BGU60_RS01280Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0993912
Simplified PFAM architecture for RROC_0993912
PFAM domain coverage: 201 / 236 aa (85.2%)
1 aa236 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[4-116] | LytTR[139-226]
- Domain count: 2
- Matched identifier: RROC_0993912
- Positioned domains: Response_reg 4-116 ; Response_reg 4-116 ; LytTR 139-226 ; LytTR 139-226
Cluster members and taxonomy
Representative gene: GCF_002303425#BGU60_RS01280
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_033240165
AssemblyASM3324016v1 · Contighaploid
Genome composition4 003 039 bp · 28,5% GCClostridioides difficile
Signal transduction countsGenes 104 · HK 51 · RR 53CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key