1 PAS_9#1
362-462 aa · 101 aa · 13.6% of protein
Raw token
PAS_9:362:0.0000349:462:101:102P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
SBH71_RS13940
Histidine kinase, Classic
Clostridioides difficile · GCF_033240045
ClassHKTypeClassicLength745 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_033240045#SBH71_RS13940Stable P2CS identifier used across views.
GenomeGCF_033240045Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
PAS_9HisKAHATPase_c
Protein length745 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage284 / 745 aa (38.1%)Merged over positioned domains only.
Domain description1 PAS_9,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa745 aa
Domain-by-domain annotation3 items
2 HisKA#2
488-559 aa · 72 aa · 9.7% of protein
Raw token
HisKA:488:0.0000000000000122:559:72:643 HATPase_c#3
606-716 aa · 111 aa · 14.9% of protein
Raw token
HATPase_c:606:2.05e-31:716:111:109- Raw architecture: PAS_9:362:0.0000349:462:101:102#HisKA:488:0.0000000000000122:559:72:64#HATPase_c:606:2.05e-31:716:111:109
- Domain description: 1 PAS_9,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_033240045::NZ_BTDD01000035.1::G00044
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span41559-43798Genomic interval covered by the local TCS group.
Identifiers
Old locus tagJSCD6_27960RefSeq proteinWP_317915533.1
Context group ID
GCF_033240045::NZ_BTDD01000035.1::G00044Context members
SBH71_RS13940
Partner locus tags
SBH71_RS13940
Partner old locus tags
JSCD6_27960
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_317915533.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagSBH71_RS13940Primary locus identifier stored in the genes table.
Old locus tagJSCD6_27960Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_BTDD01000035.1Sequence record reported by the local genomic context database.
Genomic interval41 559-43 798 nt2 240 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span41 559-43 798 ntGCF_033240045::NZ_BTDD01000035.1::G00044
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_033240045::NZ_BTDD01000035.1::G00044Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_BTDD01000035.1All displayed genes belong to this local TCS context.
Neighborhood span41 559-43 798 nt2 240 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
41 559 nt43 798 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
SBH71_RS13940GCF_033240045#SBH71_RS13940
HKClassicCurrent focus
41 559-43 798 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000164175#HMPREF0220_RS17020Use this link to inspect the representative gene detail.
PFAM architecturePAS_8 + PAS_9 + HisKA + HATPase_c4 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0387826
Simplified PFAM architecture for HKOC_0387826
PFAM domain coverage: 341 / 912 aa (37.4%)
1 aa912 aa
PAS_8PAS_9HisKAHATPase_c
- Simplified architecture: PAS_8 + PAS_9 + HisKA + HATPase_c
- Raw architecture: PAS_8[303-356] | PAS_9[529-632] | HisKA[655-726] | HATPase_c[773-883]
- Domain count: 4
- Matched identifier: HKOC_0387826
- Positioned domains: PAS_8 303-356 ; PAS_9 529-632 ; HisKA 655-726 ; HATPase_c 773-883
Cluster members and taxonomy
Representative gene: GCF_000164175#HMPREF0220_RS17020
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_033240045
AssemblyASM3324004v1 · Contighaploid
Genome composition3 988 020 bp · 28,5% GCClostridioides difficile
Signal transduction countsGenes 97 · HK 48 · RR 49CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key