1 HisKA#1
242-306 aa · 65 aa · 14.0% of protein
Raw token
HisKA:242:0.00000000000207:306:65:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
SBH78_RS12330
Histidine kinase, Classic
Clostridioides difficile · GCF_033240005
ClassHKTypeClassicLength463 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_033240005#SBH78_RS12330Stable P2CS identifier used across views.
GenomeGCF_033240005Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length463 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage174 / 463 aa (37.6%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa463 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
353-461 aa · 109 aa · 23.5% of protein
Raw token
HATPase_c:353:1.3e-19:461:109:109- Raw architecture: HisKA:242:0.00000000000207:306:65:64#HATPase_c:353:1.3e-19:461:109:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_033240005::NZ_BTDC01000046.1::G00041
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span35-1426Genomic interval covered by the local TCS group.
Identifiers
Old locus tagJSCD5_24700RefSeq proteinWP_029158131.1
Context group ID
GCF_033240005::NZ_BTDC01000046.1::G00041Context members
SBH78_RS12330
Partner locus tags
SBH78_RS12330
Partner old locus tags
JSCD5_24700
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_029158131.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagSBH78_RS12330Primary locus identifier stored in the genes table.
Old locus tagJSCD5_24700Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_BTDC01000046.1Sequence record reported by the local genomic context database.
Genomic interval35-1 426 nt1 392 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span35-1 426 ntGCF_033240005::NZ_BTDC01000046.1::G00041
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_033240005::NZ_BTDC01000046.1::G00041Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_BTDC01000046.1All displayed genes belong to this local TCS context.
Neighborhood span35-1 426 nt1 392 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
35 nt1 426 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
SBH78_RS12330GCF_033240005#SBH78_RS12330
HKClassicCurrent focus
35-1 426 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_033240005#SBH78_RS12330The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1803456
Simplified PFAM architecture for HKOC_1803456
PFAM domain coverage: 174 / 463 aa (37.6%)
1 aa463 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[242-306] | HATPase_c[353-461]
- Domain count: 2
- Matched identifier: HKOC_1803456
- Positioned domains: HisKA 242-306 ; HATPase_c 353-461
Cluster members and taxonomy
Representative gene: GCF_033240005#SBH78_RS12330
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_033240005
AssemblyASM3324000v1 · Contighaploid
Genome composition4 024 291 bp · 29,0% GCClostridioides difficile
Signal transduction countsGenes 97 · HK 48 · RR 49CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key