1 HisKA#1
58-120 aa · 63 aa · 22.7% of protein
Raw token
HisKA:58:0.0000000788:120:63:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
SBI57_RS15180
Histidine kinase, Classic
Clostridioides difficile · GCF_033239845
ClassHKTypeClassicLength278 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_033239845#SBI57_RS15180Stable P2CS identifier used across views.
GenomeGCF_033239845Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length278 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage167 / 278 aa (60.1%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa278 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
168-271 aa · 104 aa · 37.4% of protein
Raw token
HATPase_c:168:3.27e-23:271:104:109- Raw architecture: HisKA:58:0.0000000788:120:63:64#HATPase_c:168:3.27e-23:271:104:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_033239845::NZ_BTCZ01000135.1::G00051
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span8457-9295Genomic interval covered by the local TCS group.
Identifiers
Old locus tagJSCD2_30000RefSeq proteinWP_317911341.1
Context group ID
GCF_033239845::NZ_BTCZ01000135.1::G00051Context members
SBI57_RS15180
Partner locus tags
SBI57_RS15180
Partner old locus tags
JSCD2_30000
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_317911341.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagSBI57_RS15180Primary locus identifier stored in the genes table.
Old locus tagJSCD2_30000Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_BTCZ01000135.1Sequence record reported by the local genomic context database.
Genomic interval8 457-9 295 nt839 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span8 457-9 295 ntGCF_033239845::NZ_BTCZ01000135.1::G00051
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_033239845::NZ_BTCZ01000135.1::G00051Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_BTCZ01000135.1All displayed genes belong to this local TCS context.
Neighborhood span8 457-9 295 nt839 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
8 457 nt9 295 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
SBI57_RS15180GCF_033239845#SBI57_RS15180
HKClassicCurrent focus
8 457-9 295 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000155065#QAE_RS0209400Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2884672
Simplified PFAM architecture for HKOC_2884672
PFAM domain coverage: 168 / 302 aa (55.6%)
1 aa302 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[82-144] | HATPase_c[192-296]
- Domain count: 2
- Matched identifier: HKOC_2884672
- Positioned domains: HisKA 82-144 ; HATPase_c 192-296
Cluster members and taxonomy
Representative gene: GCF_000155065#QAE_RS0209400
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_033239845
AssemblyASM3323984v1 · Contighaploid
Genome composition4 013 641 bp · 29,0% GCClostridioides difficile
Signal transduction countsGenes 96 · HK 47 · RR 49CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key