1 PAS_4#1
23-131 aa · 109 aa · 27.6% of protein
Raw token
PAS_4:23:0.00000000122:131:115:110P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
SBI57_RS11285
Histidine kinase, Classic
Clostridioides difficile · GCF_033239845
ClassHKTypeClassicLength395 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_033239845#SBI57_RS11285Stable P2CS identifier used across views.
GenomeGCF_033239845Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
PAS_4HisKAHATPase_c
Protein length395 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage290 / 395 aa (73.4%)Merged over positioned domains only.
Domain description1 PAS_4,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa395 aa
Domain-by-domain annotation3 items
2 HisKA#2
140-209 aa · 70 aa · 17.7% of protein
Raw token
HisKA:140:0.00000000000000173:209:70:643 HATPase_c#3
256-366 aa · 111 aa · 28.1% of protein
Raw token
HATPase_c:256:2.82e-28:366:111:109- Raw architecture: PAS_4:23:0.00000000122:131:115:110#HisKA:140:0.00000000000000173:209:70:64#HATPase_c:256:2.82e-28:366:111:109
- Domain description: 1 PAS_4,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_033239845::NZ_BTCZ01000068.1::G00037
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span1-1188Genomic interval covered by the local TCS group.
Identifiers
Old locus tagJSCD2_22420RefSeq proteinWP_317911267.1
Context group ID
GCF_033239845::NZ_BTCZ01000068.1::G00037Context members
SBI57_RS11285
Partner locus tags
SBI57_RS11285
Partner old locus tags
JSCD2_22420
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_317911267.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagSBI57_RS11285Primary locus identifier stored in the genes table.
Old locus tagJSCD2_22420Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_BTCZ01000068.1Sequence record reported by the local genomic context database.
Genomic interval1-1 188 nt1 188 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span1-1 188 ntGCF_033239845::NZ_BTCZ01000068.1::G00037
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_033239845::NZ_BTCZ01000068.1::G00037Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_BTCZ01000068.1All displayed genes belong to this local TCS context.
Neighborhood span1-1 188 nt1 188 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 nt1 188 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
SBI57_RS11285GCF_033239845#SBI57_RS11285
HKClassicCurrent focus
1-1 188 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000155065#QAE_RS0207840Use this link to inspect the representative gene detail.
PFAM architecturePAS_4 + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0977609
Simplified PFAM architecture for HKOC_0977609
PFAM domain coverage: 290 / 618 aa (46.9%)
1 aa618 aa
PAS_4HisKAHATPase_c
- Simplified architecture: PAS_4 + HisKA + HATPase_c
- Raw architecture: PAS_4[246-354] | HisKA[363-432] | HATPase_c[479-589]
- Domain count: 3
- Matched identifier: HKOC_0977609
- Positioned domains: PAS_4 246-354 ; HisKA 363-432 ; HATPase_c 479-589
Cluster members and taxonomy
Representative gene: GCF_000155065#QAE_RS0207840
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_033239845
AssemblyASM3323984v1 · Contighaploid
Genome composition4 013 641 bp · 29,0% GCClostridioides difficile
Signal transduction countsGenes 96 · HK 47 · RR 49CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key