1 Response_reg#1
12-106 aa · 95 aa · 88.0% of protein
Raw token
Response_reg:12:0.00000000000183:106:99:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
SBI32_RS17730
Response regulator, CheY family
Clostridioides difficile · GCF_033239795
ClassRRTypeCheYLength108 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_033239795#SBI32_RS17730Stable P2CS identifier used across views.
GenomeGCF_033239795Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
Response_reg
Protein length108 aaLength used to scale native and Biotite-like views.
Annotated domains11 with usable coordinates.
Domain coverage95 / 108 aa (88.0%)Merged over positioned domains only.
Domain description1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa108 aa
Domain-by-domain annotation1 item
- Raw architecture: Response_reg:12:0.00000000000183:106:99:111
- Domain description: 1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_033239795::NZ_BTCY01000184.1::G00053
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span1-324Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_033239795::NZ_BTCY01000184.1::G00053Context members
SBI32_RS17730
Partner locus tags
SBI32_RS17730
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_317911027.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagSBI32_RS17730Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_BTCY01000184.1Sequence record reported by the local genomic context database.
Genomic interval1-324 nt324 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span1-324 ntGCF_033239795::NZ_BTCY01000184.1::G00053
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_033239795::NZ_BTCY01000184.1::G00053Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_BTCY01000184.1All displayed genes belong to this local TCS context.
Neighborhood span1-324 nt324 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 nt324 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
SBI32_RS17730GCF_033239795#SBI32_RS17730
RRCheYCurrent focus
1-324 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000164655#HMPREF0219_RS05535Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0824839
Simplified PFAM architecture for RROC_0824839
PFAM domain coverage: 197 / 243 aa (81.1%)
1 aa243 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[12-123] | LytTR[146-230]
- Domain count: 2
- Matched identifier: RROC_0824839
- Positioned domains: Response_reg 12-123 ; Response_reg 12-123 ; LytTR 146-230 ; LytTR 146-230
Cluster members and taxonomy
Representative gene: GCF_000164655#HMPREF0219_RS05535
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_033239795
AssemblyASM3323979v1 · Contighaploid
Genome composition4 014 793 bp · 29,0% GCClostridioides difficile
Signal transduction countsGenes 95 · HK 47 · RR 48CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key