1 HisKA#1
84-144 aa · 61 aa · 20.2% of protein
Raw token
HisKA:84:0.0000000000678:144:61:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
SBI32_RS17035
Histidine kinase, Classic
Clostridioides difficile · GCF_033239795
ClassHKTypeClassicLength302 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_033239795#SBI32_RS17035Stable P2CS identifier used across views.
GenomeGCF_033239795Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length302 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage161 / 302 aa (53.3%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa302 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
200-299 aa · 100 aa · 33.1% of protein
Raw token
HATPase_c:200:1.45e-25:299:100:109- Raw architecture: HisKA:84:0.0000000000678:144:61:64#HATPase_c:200:1.45e-25:299:100:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_033239795::NZ_BTCY01000153.1::G00051
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span5285-6195Genomic interval covered by the local TCS group.
Identifiers
Old locus tagJSCD1_33600RefSeq proteinWP_317911021.1
Context group ID
GCF_033239795::NZ_BTCY01000153.1::G00051Context members
SBI32_RS17035
Partner locus tags
SBI32_RS17035
Partner old locus tags
JSCD1_33600
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_317911021.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagSBI32_RS17035Primary locus identifier stored in the genes table.
Old locus tagJSCD1_33600Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_BTCY01000153.1Sequence record reported by the local genomic context database.
Genomic interval5 285-6 195 nt911 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span5 285-6 195 ntGCF_033239795::NZ_BTCY01000153.1::G00051
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_033239795::NZ_BTCY01000153.1::G00051Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_BTCY01000153.1All displayed genes belong to this local TCS context.
Neighborhood span5 285-6 195 nt911 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
5 285 nt6 195 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
SBI32_RS17035GCF_033239795#SBI32_RS17035
HKClassicCurrent focus
5 285-6 195 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000155065#QAE_RS0212490Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2113132
Simplified PFAM architecture for HKOC_2113132
PFAM domain coverage: 166 / 436 aa (38.1%)
1 aa436 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[217-278] | HATPase_c[330-433]
- Domain count: 2
- Matched identifier: HKOC_2113132
- Positioned domains: HisKA 217-278 ; HATPase_c 330-433
Cluster members and taxonomy
Representative gene: GCF_000155065#QAE_RS0212490
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_033239795
AssemblyASM3323979v1 · Contighaploid
Genome composition4 014 793 bp · 29,0% GCClostridioides difficile
Signal transduction countsGenes 95 · HK 47 · RR 48CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key