1 HisKA#1
195-255 aa · 61 aa · 14.8% of protein
Raw token
HisKA:195:0.000000000000671:255:61:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
SBI32_RS09805
Histidine kinase, Classic
Clostridioides difficile · GCF_033239795
ClassHKTypeClassicLength413 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_033239795#SBI32_RS09805Stable P2CS identifier used across views.
GenomeGCF_033239795Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length413 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage167 / 413 aa (40.4%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa413 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
302-407 aa · 106 aa · 25.7% of protein
Raw token
HATPase_c:302:1.42e-26:407:107:109- Raw architecture: HisKA:195:0.000000000000671:255:61:64#HATPase_c:302:1.42e-26:407:107:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_033239795::NZ_BTCY01000041.1::G00032
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span4424-6359Genomic interval covered by the local TCS group.
Identifiers
Old locus tagJSCD1_19480RefSeq proteinWP_003418730.1
Context group ID
GCF_033239795::NZ_BTCY01000041.1::G00032Context members
SBI32_RS09800SBI32_RS09805
Partner locus tags
SBI32_RS09800SBI32_RS09805
Partner old locus tags
JSCD1_19470JSCD1_19480
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_003418730.1Primary protein accession used for annex mappings.
UniProt accessionD5Q1G3Primary UniProt accession resolved in the annex database.
UniProt IDD5Q1G3_CLODIDisplay identifier provided by UniProt.
GO / PubMed4 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagSBI32_RS09805Primary locus identifier stored in the genes table.
Old locus tagJSCD1_19480Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_BTCY01000041.1Sequence record reported by the local genomic context database.
Genomic interval5 118-6 359 nt1 242 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span4 424-6 359 ntGCF_033239795::NZ_BTCY01000041.1::G00032
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_033239795::NZ_BTCY01000041.1::G00032Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_BTCY01000041.1All displayed genes belong to this local TCS context.
Neighborhood span4 424-6 359 nt1 936 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
4 424 nt6 359 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
SBI32_RS09800GCF_033239795#SBI32_RS09800
RROmpR
4 424-5 107 nt · Forward (+)
SBI32_RS09805GCF_033239795#SBI32_RS09805
HKClassicCurrent focus
5 118-6 359 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000164175#HMPREF0220_RS06750Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2328127
Simplified PFAM architecture for HKOC_2328127
PFAM domain coverage: 172 / 413 aa (41.6%)
1 aa413 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[193-255] | HATPase_c[302-410]
- Domain count: 2
- Matched identifier: HKOC_2328127
- Positioned domains: HisKA 193-255 ; HATPase_c 302-410
Cluster members and taxonomy
Representative gene: GCF_000164175#HMPREF0220_RS06750
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_033239795
AssemblyASM3323979v1 · Contighaploid
Genome composition4 014 793 bp · 29,0% GCClostridioides difficile
Signal transduction countsGenes 95 · HK 47 · RR 48CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key