1 Response_reg#1
4-112 aa · 109 aa · 49.1% of protein
Raw token
Response_reg:4:2.16e-23:112:110:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
E6217_RS03705
Response regulator OmpR family
Clostridium sp. · GCF_032552855
ClassRRTypeOmpRLength222 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_032552855#E6217_RS03705Stable P2CS identifier used across views.
GenomeGCF_032552855Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Clostridiaceae; Clostridium
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length222 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage185 / 222 aa (83.3%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa222 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
146-221 aa · 76 aa · 34.2% of protein
Raw token
Trans_reg_C:146:1.7e-28:221:77:77- Raw architecture: Response_reg:4:2.16e-23:112:110:111#Trans_reg_C:146:1.7e-28:221:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_032552855::NZ_JAWGRQ010000010.1::G00007
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span14510-15178Genomic interval covered by the local TCS group.
Identifiers
Old locus tagE6217_03705RefSeq proteinWP_049178684.1
Context group ID
GCF_032552855::NZ_JAWGRQ010000010.1::G00007Context members
E6217_RS03705
Partner locus tags
E6217_RS03705
Partner old locus tags
E6217_03705
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_049178684.1Primary protein accession used for annex mappings.
UniProt accessionA0A6N2ZJ39Primary UniProt accession resolved in the annex database.
UniProt IDA0A6N2ZJ39_9CLOTDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagE6217_RS03705Primary locus identifier stored in the genes table.
Old locus tagE6217_03705Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAWGRQ010000010.1Sequence record reported by the local genomic context database.
Genomic interval14 510-15 178 nt669 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span14 510-15 178 ntGCF_032552855::NZ_JAWGRQ010000010.1::G00007
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_032552855::NZ_JAWGRQ010000010.1::G00007Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAWGRQ010000010.1All displayed genes belong to this local TCS context.
Neighborhood span14 510-15 178 nt669 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
14 510 nt15 178 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
E6217_RS03705GCF_032552855#E6217_RS03705
RROmpRCurrent focus
14 510-15 178 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001404795#ARB71_RS14670Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1641678
Simplified PFAM architecture for RROC_1641678
PFAM domain coverage: 185 / 222 aa (83.3%)
1 aa222 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[4-112] | Trans_reg_C[146-221]
- Domain count: 2
- Matched identifier: RROC_1641678
- Positioned domains: Response_reg 4-112 ; Response_reg 4-112 ; Trans_reg_C 146-221 ; Trans_reg_C 146-221
Cluster members and taxonomy
Representative gene: GCF_001404795#ARB71_RS14670
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 506 · GCF_032552855
AssemblyASM3255285v1 · Contighaploid
Genome composition3 575 458 bp · 30,0% GCClostridium sp.
Signal transduction countsGenes 72 · HK 38 · RR 32CheA 1 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyClostridiaceaeGenusClostridium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Clostridiaceae7Clostridium
Related genes
Preview from the same derived genome key