1 HAMP#1
185-253 aa · 69 aa · 11.1% of protein
Raw token
HAMP:185:0.000000119:253:69:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
E7H95_RS01155
Histidine kinase, Classic
Clostridium sp. · GCF_032515925
ClassHKTypeClassicLength621 aaTM0ValidatedNoCompleteYesContexttetrad
Gene IDGCF_032515925#E7H95_RS01155Stable P2CS identifier used across views.
GenomeGCF_032515925Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Clostridiaceae; Clostridium
Domain signature
Compact overview inferred from the domain field
HAMPPASHisKAHATPase_c
Protein length621 aaLength used to scale native and Biotite-like views.
Annotated domains44 with usable coordinates.
Domain coverage357 / 621 aa (57.5%)Merged over positioned domains only.
Domain description1 HAMP,1 PAS,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa621 aa
Domain-by-domain annotation4 items
2 PAS#2
270-376 aa · 107 aa · 17.2% of protein
Raw token
PAS:270:0.0000000428:376:110:1133 HisKA#3
385-452 aa · 68 aa · 11.0% of protein
Raw token
HisKA:385:1.42e-21:452:68:644 HATPase_c#4
498-610 aa · 113 aa · 18.2% of protein
Raw token
HATPase_c:498:1.72e-26:610:113:109- Raw architecture: HAMP:185:0.000000119:253:69:69#PAS:270:0.0000000428:376:110:113#HisKA:385:1.42e-21:452:68:64#HATPase_c:498:1.72e-26:610:113:109
- Domain description: 1 HAMP,1 PAS,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labeltetradGCF_032515925::NZ_JAWFKY010000003.1::G00004
Group size44 locus tags listed below.
HK / RR2 / 2Counts resolved for the local TCS neighborhood.
Context span23040-28944Genomic interval covered by the local TCS group.
Identifiers
Old locus tagE7H95_01155RefSeq proteinWP_055254746.1
Context group ID
GCF_032515925::NZ_JAWFKY010000003.1::G00004Context members
E7H95_RS01150E7H95_RS01155E7H95_RS01160E7H95_RS01165
Partner locus tags
E7H95_RS01150E7H95_RS01155E7H95_RS01160E7H95_RS01165
Partner old locus tags
E7H95_01150E7H95_01155E7H95_01160E7H95_01165
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_055254746.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagE7H95_RS01155Primary locus identifier stored in the genes table.
Old locus tagE7H95_01155Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAWFKY010000003.1Sequence record reported by the local genomic context database.
Genomic interval23 680-25 545 nt1 866 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span23 040-28 944 ntGCF_032515925::NZ_JAWFKY010000003.1::G00004
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_032515925::NZ_JAWFKY010000003.1::G00004Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labeltetradNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAWFKY010000003.1All displayed genes belong to this local TCS context.
Neighborhood span23 040-28 944 nt5 905 nt
Members41 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
23 040 nt28 944 nt
Neighborhood gene cards
4 genes in the current local neighborhood.
E7H95_RS01150GCF_032515925#E7H95_RS01150
RRunclassified
23 040-23 702 nt · Reverse (-)
E7H95_RS01155GCF_032515925#E7H95_RS01155
HKClassicCurrent focus
23 680-25 545 nt · Reverse (-)
E7H95_RS01160GCF_032515925#E7H95_RS01160
RROmpR
25 566-26 258 nt · Reverse (-)
E7H95_RS01165GCF_032515925#E7H95_RS01165
HKClassic
26 227-28 944 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001404795#ARB71_RS13550Use this link to inspect the representative gene detail.
PFAM architecturePAS + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0970276
Simplified PFAM architecture for HKOC_0970276
PFAM domain coverage: 256 / 621 aa (41.2%)
1 aa621 aa
PASHisKAHATPase_c
- Simplified architecture: PAS + HisKA + HATPase_c
- Raw architecture: PAS[269-344] | HisKA[385-452] | HATPase_c[499-610]
- Domain count: 3
- Matched identifier: HKOC_0970276
- Positioned domains: PAS 269-344 ; HisKA 385-452 ; HATPase_c 499-610
Cluster members and taxonomy
Representative gene: GCF_001404795#ARB71_RS13550
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 506 · GCF_032515925
AssemblyASM3251592v1 · Scaffoldhaploid
Genome composition3 777 056 bp · 29,5% GCClostridium sp.
Signal transduction countsGenes 68 · HK 34 · RR 32CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyClostridiaceaeGenusClostridium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Clostridiaceae7Clostridium
Related genes
Preview from the same derived genome key