1 Response_reg#1
4-118 aa · 115 aa · 50.4% of protein
Raw token
Response_reg:4:5.27e-25:118:115:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
E7G10_RS03765
Response regulator, unclassified
Clostridium sp. · GCF_032507055
ClassRRTypeunclassifiedLength228 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_032507055#E7G10_RS03765Stable P2CS identifier used across views.
GenomeGCF_032507055Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Clostridiaceae; Clostridium
Domain signature
Compact overview inferred from the domain field
Response_regHTH_11
Protein length228 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage153 / 228 aa (67.1%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_11Summary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa228 aa
Domain-by-domain annotation2 items
2 HTH_11#2
164-201 aa · 38 aa · 16.7% of protein
Raw token
HTH_11:164:0.000000627:201:38:52- Raw architecture: Response_reg:4:5.27e-25:118:115:111#HTH_11:164:0.000000627:201:38:52
- Domain description: 1 Response_reg,1 HTH_11
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_032507055::NZ_JAWFDV010000003.1::G00021
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span176883-177569Genomic interval covered by the local TCS group.
Identifiers
Old locus tagE7G10_03765RefSeq proteinWP_316336395.1
Context group ID
GCF_032507055::NZ_JAWFDV010000003.1::G00021Context members
E7G10_RS03765
Partner locus tags
E7G10_RS03765
Partner old locus tags
E7G10_03765
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_316336395.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagE7G10_RS03765Primary locus identifier stored in the genes table.
Old locus tagE7G10_03765Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAWFDV010000003.1Sequence record reported by the local genomic context database.
Genomic interval176 883-177 569 nt687 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span176 883-177 569 ntGCF_032507055::NZ_JAWFDV010000003.1::G00021
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_032507055::NZ_JAWFDV010000003.1::G00021Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAWFDV010000003.1All displayed genes belong to this local TCS context.
Neighborhood span176 883-177 569 nt687 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
176 883 nt177 569 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
E7G10_RS03765GCF_032507055#E7G10_RS03765
RRunclassifiedCurrent focus
176 883-177 569 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_032507055#E7G10_RS03765The current gene is the representative for this cluster.
PFAM architectureResponse_reg + HTH_112 domains in the representative PFAM annotation.
PFAM architecture for RROC_1335763
Simplified PFAM architecture for RROC_1335763
PFAM domain coverage: 154 / 228 aa (67.5%)
1 aa228 aa
Response_regHTH_11
- Simplified architecture: Response_reg + HTH_11
- Raw architecture: Response_reg[4-117] | HTH_11[165-204]
- Domain count: 2
- Matched identifier: RROC_1335763
- Positioned domains: Response_reg 4-117 ; HTH_11 165-204
Cluster members and taxonomy
Representative gene: GCF_032507055#E7G10_RS03765
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 506 · GCF_032507055
AssemblyASM3250705v1 · Contighaploid
Genome composition3 698 082 bp · 29,5% GCClostridium sp.
Signal transduction countsGenes 71 · HK 37 · RR 32CheA 1 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyClostridiaceaeGenusClostridium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Clostridiaceae7Clostridium
Related genes
Preview from the same derived genome key