1 HAMP#1
13-79 aa · 67 aa · 15.0% of protein
Raw token
HAMP:13:0.000000401:79:67:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
E7F43_RS08020
Histidine kinase, Classic
Streptococcus sp. · GCF_032504455
ClassHKTypeClassicLength446 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_032504455#E7F43_RS08020Stable P2CS identifier used across views.
GenomeGCF_032504455Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales; Streptococcaceae; Streptococcus
Domain signature
Compact overview inferred from the domain field
HAMPPASHisKAHATPase_c
Protein length446 aaLength used to scale native and Biotite-like views.
Annotated domains44 with usable coordinates.
Domain coverage350 / 446 aa (78.5%)Merged over positioned domains only.
Domain description1 HAMP,1 PAS,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa446 aa
Domain-by-domain annotation4 items
2 PAS#2
93-197 aa · 105 aa · 23.5% of protein
Raw token
PAS:93:0.000000282:197:112:1133 HisKA#3
207-272 aa · 66 aa · 14.8% of protein
Raw token
HisKA:207:2.6e-16:272:66:644 HATPase_c#4
325-436 aa · 112 aa · 25.1% of protein
Raw token
HATPase_c:325:4.16e-36:436:112:109- Raw architecture: HAMP:13:0.000000401:79:67:69#PAS:93:0.000000282:197:112:113#HisKA:207:2.6e-16:272:66:64#HATPase_c:325:4.16e-36:436:112:109
- Domain description: 1 HAMP,1 PAS,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_032504455::NZ_JAWFBG010000174.1::G00002
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span815-2858Genomic interval covered by the local TCS group.
Identifiers
Old locus tagE7F43_08035RefSeq proteinWP_164376649.1
Context group ID
GCF_032504455::NZ_JAWFBG010000174.1::G00002Context members
E7F43_RS08020E7F43_RS08025
Partner locus tags
E7F43_RS08020E7F43_RS08025
Partner old locus tags
E7F43_08035E7F43_08040
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_164376649.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagE7F43_RS08020Primary locus identifier stored in the genes table.
Old locus tagE7F43_08035Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAWFBG010000174.1Sequence record reported by the local genomic context database.
Genomic interval815-2 155 nt1 341 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span815-2 858 ntGCF_032504455::NZ_JAWFBG010000174.1::G00002
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_032504455::NZ_JAWFBG010000174.1::G00002Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAWFBG010000174.1All displayed genes belong to this local TCS context.
Neighborhood span815-2 858 nt2 044 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
815 nt2 858 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
E7F43_RS08020GCF_032504455#E7F43_RS08020
HKClassicCurrent focus
815-2 155 nt · Reverse (-)
E7F43_RS08025GCF_032504455#E7F43_RS08025
RROmpR
2 148-2 858 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_032504455#E7F43_RS08020The current gene is the representative for this cluster.
PFAM architectureCovS-like_HAMP + PAS + HisKA + HATPase_c4 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2018055
Simplified PFAM architecture for HKOC_2018055
PFAM domain coverage: 336 / 446 aa (75.3%)
1 aa446 aa
CovS-like_HAMPPASHisKAHATPase_c
- Simplified architecture: CovS-like_HAMP + PAS + HisKA + HATPase_c
- Raw architecture: CovS-like_HAMP[31-86] | PAS[94-197] | HisKA[208-272] | HATPase_c[325-435]
- Domain count: 4
- Matched identifier: HKOC_2018055
- Positioned domains: CovS-like_HAMP 31-86 ; PAS 94-197 ; HisKA 208-272 ; HATPase_c 325-435
Cluster members and taxonomy
Representative gene: GCF_032504455#E7F43_RS08020
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 306 · GCF_032504455
AssemblyASM3250445v1 · Scaffoldhaploid
Genome composition2 001 585 bp · 40,0% GCStreptococcus sp.
Signal transduction countsGenes 24 · HK 10 · RR 13CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderLactobacillalesFamilyStreptococcaceaeGenusStreptococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Lactobacillales6Streptococcaceae7Streptococcus
Related genes
Preview from the same derived genome key