1 HisKA_3#1
175-239 aa · 65 aa · 17.9% of protein
Raw token
HisKA_3:175:3.15e-19:239:65:68P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
E7F43_RS05570
Histidine kinase, Classic
Streptococcus sp. · GCF_032504455
ClassHKTypeClassicLength364 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_032504455#E7F43_RS05570Stable P2CS identifier used across views.
GenomeGCF_032504455Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales; Streptococcaceae; Streptococcus
Domain signature
Compact overview inferred from the domain field
HisKA_3HATPase_c
Protein length364 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage146 / 364 aa (40.1%)Merged over positioned domains only.
Domain description1 HisKA_3,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa364 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
280-360 aa · 81 aa · 22.3% of protein
Raw token
HATPase_c:280:0.0000000327:360:102:109- Raw architecture: HisKA_3:175:3.15e-19:239:65:68#HATPase_c:280:0.0000000327:360:102:109
- Domain description: 1 HisKA_3,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_032504455::NZ_JAWFBG010000081.1::G00014
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span91-1185Genomic interval covered by the local TCS group.
Identifiers
Old locus tagE7F43_05580RefSeq proteinWP_155164576.1
Context group ID
GCF_032504455::NZ_JAWFBG010000081.1::G00014Context members
E7F43_RS05570
Partner locus tags
E7F43_RS05570
Partner old locus tags
E7F43_05580
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_155164576.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagE7F43_RS05570Primary locus identifier stored in the genes table.
Old locus tagE7F43_05580Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAWFBG010000081.1Sequence record reported by the local genomic context database.
Genomic interval91-1 185 nt1 095 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span91-1 185 ntGCF_032504455::NZ_JAWFBG010000081.1::G00014
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_032504455::NZ_JAWFBG010000081.1::G00014Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAWFBG010000081.1All displayed genes belong to this local TCS context.
Neighborhood span91-1 185 nt1 095 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
91 nt1 185 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
E7F43_RS05570GCF_032504455#E7F43_RS05570
HKClassicCurrent focus
91-1 185 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_009716765#GMC15_RS03630Use this link to inspect the representative gene detail.
PFAM architectureHisKA_3 + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2726513
Simplified PFAM architecture for HKOC_2726513
PFAM domain coverage: 113 / 364 aa (31.0%)
1 aa364 aa
HisKA_3HATPase_c
- Simplified architecture: HisKA_3 + HATPase_c
- Raw architecture: HisKA_3[175-239] | HATPase_c[278-325]
- Domain count: 2
- Matched identifier: HKOC_2726513
- Positioned domains: HisKA_3 175-239 ; HATPase_c 278-325
Cluster members and taxonomy
Representative gene: GCF_009716765#GMC15_RS03630
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 306 · GCF_032504455
AssemblyASM3250445v1 · Scaffoldhaploid
Genome composition2 001 585 bp · 40,0% GCStreptococcus sp.
Signal transduction countsGenes 24 · HK 10 · RR 13CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderLactobacillalesFamilyStreptococcaceaeGenusStreptococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Lactobacillales6Streptococcaceae7Streptococcus
Related genes
Preview from the same derived genome key