1 Response_reg#1
3-112 aa · 110 aa · 48.2% of protein
Raw token
Response_reg:3:1.28e-31:112:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
E7C61_RS09425
Response regulator OmpR family
Clostridium sp. · GCF_032501725
ClassRRTypeOmpRLength228 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_032501725#E7C61_RS09425Stable P2CS identifier used across views.
GenomeGCF_032501725Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Clostridiaceae; Clostridium
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length228 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage187 / 228 aa (82.0%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa228 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
148-224 aa · 77 aa · 33.8% of protein
Raw token
Trans_reg_C:148:3.01e-27:224:78:77- Raw architecture: Response_reg:3:1.28e-31:112:111:111#Trans_reg_C:148:3.01e-27:224:78:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_032501725::NZ_JAWEQK010000006.1::G00017
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span101239-103172Genomic interval covered by the local TCS group.
Identifiers
Old locus tagE7C61_09420RefSeq proteinWP_099328978.1
Context group ID
GCF_032501725::NZ_JAWEQK010000006.1::G00017Context members
E7C61_RS09425E7C61_RS09430
Partner locus tags
E7C61_RS09425E7C61_RS09430
Partner old locus tags
E7C61_09420E7C61_09425
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_099328978.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagE7C61_RS09425Primary locus identifier stored in the genes table.
Old locus tagE7C61_09420Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAWEQK010000006.1Sequence record reported by the local genomic context database.
Genomic interval101 239-101 925 nt687 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span101 239-103 172 ntGCF_032501725::NZ_JAWEQK010000006.1::G00017
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_032501725::NZ_JAWEQK010000006.1::G00017Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAWEQK010000006.1All displayed genes belong to this local TCS context.
Neighborhood span101 239-103 172 nt1 934 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
101 239 nt103 172 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
E7C61_RS09425GCF_032501725#E7C61_RS09425
RROmpRCurrent focus
101 239-101 925 nt · Forward (+)
E7C61_RS09430GCF_032501725#E7C61_RS09430
HKClassic
101 925-103 172 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_015549545#I2B30_RS14910Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1323934
Simplified PFAM architecture for RROC_1323934
PFAM domain coverage: 185 / 228 aa (81.1%)
1 aa228 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[3-112] | Trans_reg_C[149-223]
- Domain count: 2
- Matched identifier: RROC_1323934
- Positioned domains: Response_reg 3-112 ; Trans_reg_C 149-223
Cluster members and taxonomy
Representative gene: GCF_015549545#I2B30_RS14910
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 506 · GCF_032501725
AssemblyASM3250172v1 · Contighaploid
Genome composition3 545 834 bp · 29,5% GCClostridium sp.
Signal transduction countsGenes 72 · HK 38 · RR 32CheA 1 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyClostridiaceaeGenusClostridium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Clostridiaceae7Clostridium
Related genes
Preview from the same derived genome key