1 Response_reg#1
3-116 aa · 114 aa · 46.7% of protein
Raw token
Response_reg:3:0.000000000000327:116:116:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
E7C61_RS04510
Response regulator LytTR family
Clostridium sp. · GCF_032501725
ClassRRTypeLytTRLength244 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_032501725#E7C61_RS04510Stable P2CS identifier used across views.
GenomeGCF_032501725Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Clostridiaceae; Clostridium
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length244 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage211 / 244 aa (86.5%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa244 aa
Domain-by-domain annotation2 items
2 LytTR#2
143-239 aa · 97 aa · 39.8% of protein
Raw token
LytTR:143:0.000000000000292:239:97:98- Raw architecture: Response_reg:3:0.000000000000327:116:116:111#LytTR:143:0.000000000000292:239:97:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_032501725::NZ_JAWEQK010000002.1::G00011
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span412405-413139Genomic interval covered by the local TCS group.
Identifiers
Old locus tagE7C61_04505RefSeq proteinWP_027099285.1
Context group ID
GCF_032501725::NZ_JAWEQK010000002.1::G00011Context members
E7C61_RS04510
Partner locus tags
E7C61_RS04510
Partner old locus tags
E7C61_04505
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_027099285.1Primary protein accession used for annex mappings.
UniProt accessionA0A174HC53Primary UniProt accession resolved in the annex database.
UniProt IDA0A174HC53_9CLOTDisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagE7C61_RS04510Primary locus identifier stored in the genes table.
Old locus tagE7C61_04505Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAWEQK010000002.1Sequence record reported by the local genomic context database.
Genomic interval412 405-413 139 nt735 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span412 405-413 139 ntGCF_032501725::NZ_JAWEQK010000002.1::G00011
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_032501725::NZ_JAWEQK010000002.1::G00011Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAWEQK010000002.1All displayed genes belong to this local TCS context.
Neighborhood span412 405-413 139 nt735 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
412 405 nt413 139 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
E7C61_RS04510GCF_032501725#E7C61_RS04510
RRLytTRCurrent focus
412 405-413 139 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000424025#G594_RS0114895Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0806864
Simplified PFAM architecture for RROC_0806864
PFAM domain coverage: 209 / 244 aa (85.7%)
1 aa244 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[3-115] | LytTR[143-238]
- Domain count: 2
- Matched identifier: RROC_0806864
- Positioned domains: Response_reg 3-115 ; Response_reg 3-115 ; LytTR 143-238 ; LytTR 143-238
Cluster members and taxonomy
Representative gene: GCF_000424025#G594_RS0114895
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 506 · GCF_032501725
AssemblyASM3250172v1 · Contighaploid
Genome composition3 545 834 bp · 29,5% GCClostridium sp.
Signal transduction countsGenes 72 · HK 38 · RR 32CheA 1 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyClostridiaceaeGenusClostridium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Clostridiaceae7Clostridium
Related genes
Preview from the same derived genome key