1 HAMP#1
280-347 aa · 68 aa · 11.8% of protein
Raw token
HAMP:280:0.0000000000000148:347:68:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ABCW45_RS15665
Histidine kinase, Classic
Pilosibacter fragilis · GCF_032490495
ClassHKTypeClassicLength575 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_032490495#ABCW45_RS15665Stable P2CS identifier used across views.
GenomeGCF_032490495Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Clostridiaceae; Pilosibacter
Domain signature
Compact overview inferred from the domain field
HAMPHis_kinaseHATPase_c
Protein length575 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage250 / 575 aa (43.5%)Merged over positioned domains only.
Domain description1 HAMP,1 His_kinase,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa575 aa
Domain-by-domain annotation3 items
2 His_kinase#2
364-442 aa · 79 aa · 13.7% of protein
Raw token
His_kinase:364:2.86e-28:442:80:803 HATPase_c#3
459-561 aa · 103 aa · 17.9% of protein
Raw token
HATPase_c:459:6.48e-17:561:108:109- Raw architecture: HAMP:280:0.0000000000000148:347:68:69#His_kinase:364:2.86e-28:442:80:80#HATPase_c:459:6.48e-17:561:108:109
- Domain description: 1 HAMP,1 His_kinase,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_032490495::NZ_JAVYJB010000023.1::G00029
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span5091-7706Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_032490495::NZ_JAVYJB010000023.1::G00029Context members
ABCW45_RS15665ABCW45_RS15670
Partner locus tags
ABCW45_RS15665ABCW45_RS15670
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_120040026.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagABCW45_RS15665Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JAVYJB010000023.1Sequence record reported by the local genomic context database.
Genomic interval5 091-6 818 nt1 728 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span5 091-7 706 ntGCF_032490495::NZ_JAVYJB010000023.1::G00029
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_032490495::NZ_JAVYJB010000023.1::G00029Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAVYJB010000023.1All displayed genes belong to this local TCS context.
Neighborhood span5 091-7 706 nt2 616 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
5 091 nt7 706 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
ABCW45_RS15665GCF_032490495#ABCW45_RS15665
HKClassicCurrent focus
5 091-6 818 nt · Forward (+)
ABCW45_RS15670GCF_032490495#ABCW45_RS15670
RRunclassified
6 858-7 706 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_032490495#ABCW45_RS15665The current gene is the representative for this cluster.
PFAM architectureHAMP + His_kinase + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1191142
Simplified PFAM architecture for HKOC_1191142
PFAM domain coverage: 230 / 575 aa (40.0%)
1 aa575 aa
HAMPHis_kinaseHATPase_c
- Simplified architecture: HAMP + His_kinase + HATPase_c
- Raw architecture: HAMP[299-347] | His_kinase[365-442] | HATPase_c[459-561]
- Domain count: 3
- Matched identifier: HKOC_1191142
- Positioned domains: HAMP 299-347 ; His_kinase 365-442 ; HATPase_c 459-561
Cluster members and taxonomy
Representative gene: GCF_032490495#ABCW45_RS15665
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 3 078 042 · GCF_032490495
AssemblyASM3249049v1 · Contigreference genome · haploid
Genome composition3 742 317 bp · 48,0% GCPilosibacter fragilis
Signal transduction countsGenes 62 · HK 28 · RR 32CheA 1 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyClostridiaceaeGenusPilosibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Clostridiaceae7Pilosibacter
Related genes
Preview from the same derived genome key