1 HAMP#1
176-246 aa · 71 aa · 15.1% of protein
Raw token
HAMP:176:1.19e-16:246:71:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
E6784_RS09575
Histidine kinase, Classic
Clostridium sp. · GCF_032476815
ClassHKTypeClassicLength471 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_032476815#E6784_RS09575Stable P2CS identifier used across views.
GenomeGCF_032476815Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Clostridiaceae; Clostridium
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length471 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage244 / 471 aa (51.8%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa471 aa
Domain-by-domain annotation3 items
2 HisKA#2
251-316 aa · 66 aa · 14.0% of protein
Raw token
HisKA:251:0.00000000000000559:316:66:643 HATPase_c#3
362-468 aa · 107 aa · 22.7% of protein
Raw token
HATPase_c:362:1.02e-21:468:108:109- Raw architecture: HAMP:176:1.19e-16:246:71:69#HisKA:251:0.00000000000000559:316:66:64#HATPase_c:362:1.02e-21:468:108:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_032476815::NZ_JAWDYB010000005.1::G00022
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span156376-158478Genomic interval covered by the local TCS group.
Identifiers
Old locus tagE6784_09575RefSeq proteinWP_027098514.1
Context group ID
GCF_032476815::NZ_JAWDYB010000005.1::G00022Context members
E6784_RS09570E6784_RS09575
Partner locus tags
E6784_RS09570E6784_RS09575
Partner old locus tags
E6784_09570E6784_09575
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_027098514.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagE6784_RS09575Primary locus identifier stored in the genes table.
Old locus tagE6784_09575Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAWDYB010000005.1Sequence record reported by the local genomic context database.
Genomic interval157 063-158 478 nt1 416 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span156 376-158 478 ntGCF_032476815::NZ_JAWDYB010000005.1::G00022
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_032476815::NZ_JAWDYB010000005.1::G00022Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAWDYB010000005.1All displayed genes belong to this local TCS context.
Neighborhood span156 376-158 478 nt2 103 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
156 376 nt158 478 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
E6784_RS09570GCF_032476815#E6784_RS09570
RROmpR
156 376-157 062 nt · Forward (+)
E6784_RS09575GCF_032476815#E6784_RS09575
HKClassicCurrent focus
157 063-158 478 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000424025#G594_RS0110355Use this link to inspect the representative gene detail.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1707465
Simplified PFAM architecture for HKOC_1707465
PFAM domain coverage: 221 / 471 aa (46.9%)
1 aa471 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[198-246] | HisKA[251-316] | HATPase_c[363-468]
- Domain count: 3
- Matched identifier: HKOC_1707465
- Positioned domains: HAMP 198-246 ; HisKA 251-316 ; HATPase_c 363-468
Cluster members and taxonomy
Representative gene: GCF_000424025#G594_RS0110355
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 506 · GCF_032476815
AssemblyASM3247681v1 · Contighaploid
Genome composition3 848 194 bp · 30,0% GCClostridium sp.
Signal transduction countsGenes 74 · HK 38 · RR 34CheA 1 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyClostridiaceaeGenusClostridium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Clostridiaceae7Clostridium
Related genes
Preview from the same derived genome key