1 PAS#1
171-278 aa · 108 aa · 19.3% of protein
Raw token
PAS:171:0.000000246:278:113:113P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
E6784_RS08240
Histidine kinase, Classic
Clostridium sp. · GCF_032476815
ClassHKTypeClassicLength560 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_032476815#E6784_RS08240Stable P2CS identifier used across views.
GenomeGCF_032476815Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Clostridiaceae; Clostridium
Domain signature
Compact overview inferred from the domain field
PASHisKAHATPase_c
Protein length560 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage288 / 560 aa (51.4%)Merged over positioned domains only.
Domain description1 PAS,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa560 aa
Domain-by-domain annotation3 items
2 HisKA#2
300-370 aa · 71 aa · 12.7% of protein
Raw token
HisKA:300:0.000000000000706:370:71:643 HATPase_c#3
417-525 aa · 109 aa · 19.5% of protein
Raw token
HATPase_c:417:3.5e-32:525:109:109- Raw architecture: PAS:171:0.000000246:278:113:113#HisKA:300:0.000000000000706:370:71:64#HATPase_c:417:3.5e-32:525:109:109
- Domain description: 1 PAS,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_032476815::NZ_JAWDYB010000004.1::G00015
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span548647-550329Genomic interval covered by the local TCS group.
Identifiers
Old locus tagE6784_08240RefSeq proteinWP_316117009.1
Context group ID
GCF_032476815::NZ_JAWDYB010000004.1::G00015Context members
E6784_RS08240
Partner locus tags
E6784_RS08240
Partner old locus tags
E6784_08240
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_316117009.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagE6784_RS08240Primary locus identifier stored in the genes table.
Old locus tagE6784_08240Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAWDYB010000004.1Sequence record reported by the local genomic context database.
Genomic interval548 647-550 329 nt1 683 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span548 647-550 329 ntGCF_032476815::NZ_JAWDYB010000004.1::G00015
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_032476815::NZ_JAWDYB010000004.1::G00015Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAWDYB010000004.1All displayed genes belong to this local TCS context.
Neighborhood span548 647-550 329 nt1 683 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
548 647 nt550 329 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
E6784_RS08240GCF_032476815#E6784_RS08240
HKClassicCurrent focus
548 647-550 329 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_032476635#E6794_RS01750Use this link to inspect the representative gene detail.
PFAM architecturePAS + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1219072
Simplified PFAM architecture for HKOC_1219072
PFAM domain coverage: 283 / 569 aa (49.7%)
1 aa569 aa
PASHisKAHATPase_c
- Simplified architecture: PAS + HisKA + HATPase_c
- Raw architecture: PAS[181-282] | HisKA[309-379] | HATPase_c[426-535]
- Domain count: 3
- Matched identifier: HKOC_1219072
- Positioned domains: PAS 181-282 ; HisKA 309-379 ; HATPase_c 426-535
Cluster members and taxonomy
Representative gene: GCF_032476635#E6794_RS01750
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 506 · GCF_032476815
AssemblyASM3247681v1 · Contighaploid
Genome composition3 848 194 bp · 30,0% GCClostridium sp.
Signal transduction countsGenes 74 · HK 38 · RR 34CheA 1 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyClostridiaceaeGenusClostridium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Clostridiaceae7Clostridium
Related genes
Preview from the same derived genome key