1 Response_reg#1
4-122 aa · 119 aa · 48.8% of protein
Raw token
Response_reg:4:2.5e-23:122:119:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
E6784_RS04690
Response regulator LytTR family
Clostridium sp. · GCF_032476815
ClassRRTypeLytTRLength244 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_032476815#E6784_RS04690Stable P2CS identifier used across views.
GenomeGCF_032476815Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Clostridiaceae; Clostridium
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length244 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage215 / 244 aa (88.1%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa244 aa
Domain-by-domain annotation2 items
2 LytTR#2
140-235 aa · 96 aa · 39.3% of protein
Raw token
LytTR:140:6.16e-21:235:101:98- Raw architecture: Response_reg:4:2.5e-23:122:119:111#LytTR:140:6.16e-21:235:101:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_032476815::NZ_JAWDYB010000003.1::G00010
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span164817-165551Genomic interval covered by the local TCS group.
Identifiers
Old locus tagE6784_04690RefSeq proteinWP_316089698.1
Context group ID
GCF_032476815::NZ_JAWDYB010000003.1::G00010Context members
E6784_RS04690
Partner locus tags
E6784_RS04690
Partner old locus tags
E6784_04690
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_316089698.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagE6784_RS04690Primary locus identifier stored in the genes table.
Old locus tagE6784_04690Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAWDYB010000003.1Sequence record reported by the local genomic context database.
Genomic interval164 817-165 551 nt735 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span164 817-165 551 ntGCF_032476815::NZ_JAWDYB010000003.1::G00010
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_032476815::NZ_JAWDYB010000003.1::G00010Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAWDYB010000003.1All displayed genes belong to this local TCS context.
Neighborhood span164 817-165 551 nt735 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
164 817 nt165 551 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
E6784_RS04690GCF_032476815#E6784_RS04690
RRLytTRCurrent focus
164 817-165 551 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_032476635#E6794_RS08925Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0818141
Simplified PFAM architecture for RROC_0818141
PFAM domain coverage: 200 / 244 aa (82.0%)
1 aa244 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[10-114] | LytTR[141-235]
- Domain count: 2
- Matched identifier: RROC_0818141
- Positioned domains: Response_reg 10-114 ; LytTR 141-235
Cluster members and taxonomy
Representative gene: GCF_032476635#E6794_RS08925
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 506 · GCF_032476815
AssemblyASM3247681v1 · Contighaploid
Genome composition3 848 194 bp · 30,0% GCClostridium sp.
Signal transduction countsGenes 74 · HK 38 · RR 34CheA 1 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyClostridiaceaeGenusClostridium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Clostridiaceae7Clostridium
Related genes
Preview from the same derived genome key