1 Response_reg#1
6-115 aa · 110 aa · 47.0% of protein
Raw token
Response_reg:6:2.43e-32:115:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
E6794_RS10120
Response regulator OmpR family
Clostridium sp. · GCF_032476635
ClassRRTypeOmpRLength234 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_032476635#E6794_RS10120Stable P2CS identifier used across views.
GenomeGCF_032476635Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Clostridiaceae; Clostridium
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length234 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage186 / 234 aa (79.5%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa234 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
156-231 aa · 76 aa · 32.5% of protein
Raw token
Trans_reg_C:156:1.19e-30:231:77:77- Raw architecture: Response_reg:6:2.43e-32:115:111:111#Trans_reg_C:156:1.19e-30:231:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_032476635::NZ_JAWDYL010000006.1::G00026
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span132984-135816Genomic interval covered by the local TCS group.
Identifiers
Old locus tagE6794_10125RefSeq proteinWP_027098214.1
Context group ID
GCF_032476635::NZ_JAWDYL010000006.1::G00026Context members
E6794_RS10120E6794_RS10125
Partner locus tags
E6794_RS10120E6794_RS10125
Partner old locus tags
E6794_10125E6794_10130
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_027098214.1Primary protein accession used for annex mappings.
UniProt accessionA0A1B8RNY8Primary UniProt accession resolved in the annex database.
UniProt IDA0A1B8RNY8_9CLOTDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagE6794_RS10120Primary locus identifier stored in the genes table.
Old locus tagE6794_10125Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAWDYL010000006.1Sequence record reported by the local genomic context database.
Genomic interval132 984-133 688 nt705 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span132 984-135 816 ntGCF_032476635::NZ_JAWDYL010000006.1::G00026
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_032476635::NZ_JAWDYL010000006.1::G00026Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAWDYL010000006.1All displayed genes belong to this local TCS context.
Neighborhood span132 984-135 816 nt2 833 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
132 984 nt135 816 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
E6794_RS10120GCF_032476635#E6794_RS10120
RROmpRCurrent focus
132 984-133 688 nt · Forward (+)
E6794_RS10125GCF_032476635#E6794_RS10125
HKClassic
133 663-135 816 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000424025#G594_RS0108590Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1048880
Simplified PFAM architecture for RROC_1048880
PFAM domain coverage: 184 / 234 aa (78.6%)
1 aa234 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[6-114] | Trans_reg_C[156-230]
- Domain count: 2
- Matched identifier: RROC_1048880
- Positioned domains: Response_reg 6-114 ; Response_reg 6-114 ; Trans_reg_C 156-230 ; Trans_reg_C 156-230
Cluster members and taxonomy
Representative gene: GCF_000424025#G594_RS0108590
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 506 · GCF_032476635
AssemblyASM3247663v1 · Contighaploid
Genome composition3 707 048 bp · 30,0% GCClostridium sp.
Signal transduction countsGenes 74 · HK 38 · RR 34CheA 1 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyClostridiaceaeGenusClostridium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Clostridiaceae7Clostridium
Related genes
Preview from the same derived genome key