1 Response_reg#1
4-112 aa · 109 aa · 49.3% of protein
Raw token
Response_reg:4:1.64e-26:112:110:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
E6794_RS08510
Response regulator OmpR family
Clostridium sp. · GCF_032476635
ClassRRTypeOmpRLength221 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_032476635#E6794_RS08510Stable P2CS identifier used across views.
GenomeGCF_032476635Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Clostridiaceae; Clostridium
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length221 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage181 / 221 aa (81.9%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa221 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
149-220 aa · 72 aa · 32.6% of protein
Raw token
Trans_reg_C:149:8.88e-27:220:73:77- Raw architecture: Response_reg:4:1.64e-26:112:110:111#Trans_reg_C:149:8.88e-27:220:73:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_032476635::NZ_JAWDYL010000005.1::G00021
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span68706-70381Genomic interval covered by the local TCS group.
Identifiers
Old locus tagE6794_08515RefSeq proteinWP_027098902.1
Context group ID
GCF_032476635::NZ_JAWDYL010000005.1::G00021Context members
E6794_RS08510E6794_RS08515
Partner locus tags
E6794_RS08510E6794_RS08515
Partner old locus tags
E6794_08515E6794_08520
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_027098902.1Primary protein accession used for annex mappings.
UniProt accessionA0A1B8RM01Primary UniProt accession resolved in the annex database.
UniProt IDA0A1B8RM01_9CLOTDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagE6794_RS08510Primary locus identifier stored in the genes table.
Old locus tagE6794_08515Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAWDYL010000005.1Sequence record reported by the local genomic context database.
Genomic interval68 706-69 371 nt666 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span68 706-70 381 ntGCF_032476635::NZ_JAWDYL010000005.1::G00021
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_032476635::NZ_JAWDYL010000005.1::G00021Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAWDYL010000005.1All displayed genes belong to this local TCS context.
Neighborhood span68 706-70 381 nt1 676 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
68 706 nt70 381 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
E6794_RS08510GCF_032476635#E6794_RS08510
RROmpRCurrent focus
68 706-69 371 nt · Forward (+)
E6794_RS08515GCF_032476635#E6794_RS08515
HKClassic
69 368-70 381 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000424025#G594_RS0112535Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1679493
Simplified PFAM architecture for RROC_1679493
PFAM domain coverage: 181 / 221 aa (81.9%)
1 aa221 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[4-112] | Trans_reg_C[149-220]
- Domain count: 2
- Matched identifier: RROC_1679493
- Positioned domains: Response_reg 4-112 ; Response_reg 4-112 ; Trans_reg_C 149-220 ; Trans_reg_C 149-220
Cluster members and taxonomy
Representative gene: GCF_000424025#G594_RS0112535
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 506 · GCF_032476635
AssemblyASM3247663v1 · Contighaploid
Genome composition3 707 048 bp · 30,0% GCClostridium sp.
Signal transduction countsGenes 74 · HK 38 · RR 34CheA 1 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyClostridiaceaeGenusClostridium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Clostridiaceae7Clostridium
Related genes
Preview from the same derived genome key