1 HisKA#1
379-443 aa · 65 aa · 10.7% of protein
Raw token
HisKA:379:4.11e-16:443:65:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
E6794_RS08340
Histidine kinase, Classic
Clostridium sp. · GCF_032476635
ClassHKTypeClassicLength607 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_032476635#E6794_RS08340Stable P2CS identifier used across views.
GenomeGCF_032476635Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Clostridiaceae; Clostridium
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length607 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage174 / 607 aa (28.7%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa607 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
490-598 aa · 109 aa · 18.0% of protein
Raw token
HATPase_c:490:0.00000000000000347:598:114:109- Raw architecture: HisKA:379:4.11e-16:443:65:64#HATPase_c:490:0.00000000000000347:598:114:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_032476635::NZ_JAWDYL010000005.1::G00020
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span26751-29235Genomic interval covered by the local TCS group.
Identifiers
Old locus tagE6794_08345RefSeq proteinWP_034866644.1
Context group ID
GCF_032476635::NZ_JAWDYL010000005.1::G00020Context members
E6794_RS08335E6794_RS08340
Partner locus tags
E6794_RS08335E6794_RS08340
Partner old locus tags
E6794_08340E6794_08345
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_034866644.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagE6794_RS08340Primary locus identifier stored in the genes table.
Old locus tagE6794_08345Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAWDYL010000005.1Sequence record reported by the local genomic context database.
Genomic interval27 412-29 235 nt1 824 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span26 751-29 235 ntGCF_032476635::NZ_JAWDYL010000005.1::G00020
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_032476635::NZ_JAWDYL010000005.1::G00020Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAWDYL010000005.1All displayed genes belong to this local TCS context.
Neighborhood span26 751-29 235 nt2 485 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
26 751 nt29 235 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
E6794_RS08335GCF_032476635#E6794_RS08335
RROmpR
26 751-27 440 nt · Forward (+)
E6794_RS08340GCF_032476635#E6794_RS08340
HKClassicCurrent focus
27 412-29 235 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001404795#ARB71_RS12050Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1019176
Simplified PFAM architecture for HKOC_1019176
PFAM domain coverage: 174 / 607 aa (28.7%)
1 aa607 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[379-443] | HATPase_c[491-599]
- Domain count: 2
- Matched identifier: HKOC_1019176
- Positioned domains: HisKA 379-443 ; HATPase_c 491-599
Cluster members and taxonomy
Representative gene: GCF_001404795#ARB71_RS12050
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 506 · GCF_032476635
AssemblyASM3247663v1 · Contighaploid
Genome composition3 707 048 bp · 30,0% GCClostridium sp.
Signal transduction countsGenes 74 · HK 38 · RR 34CheA 1 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyClostridiaceaeGenusClostridium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Clostridiaceae7Clostridium
Related genes
Preview from the same derived genome key