1 Response_reg#1
9-116 aa · 108 aa · 31.5% of protein
Raw token
Response_reg:9:6.87e-22:116:108:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
E6794_RS07840
Response regulator RpfG family
Clostridium sp. · GCF_032476635
ClassRRTypeRpfGLength343 aaTM0ValidatedNoCompleteYesContexttriad
Gene IDGCF_032476635#E6794_RS07840Stable P2CS identifier used across views.
GenomeGCF_032476635Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Clostridiaceae; Clostridium
Domain signature
Compact overview inferred from the domain field
Response_regHD
Protein length343 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage233 / 343 aa (67.9%)Merged over positioned domains only.
Domain description1 Response_reg,1 HDSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa343 aa
Domain-by-domain annotation2 items
2 HD#2
168-292 aa · 125 aa · 36.4% of protein
Raw token
HD:168:5.02e-17:292:125:110- Raw architecture: Response_reg:9:6.87e-22:116:108:111#HD:168:5.02e-17:292:125:110
- Domain description: 1 Response_reg,1 HD
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labeltriadGCF_032476635::NZ_JAWDYL010000004.1::G00019
Group size33 locus tags listed below.
HK / RR1 / 2Counts resolved for the local TCS neighborhood.
Context span276228-280496Genomic interval covered by the local TCS group.
Identifiers
Old locus tagE6794_07845RefSeq proteinWP_316089478.1
Context group ID
GCF_032476635::NZ_JAWDYL010000004.1::G00019Context members
E6794_RS07825E6794_RS07835E6794_RS07840
Partner locus tags
E6794_RS07825E6794_RS07835E6794_RS07840
Partner old locus tags
E6794_07830E6794_07840E6794_07845
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_316089478.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagE6794_RS07840Primary locus identifier stored in the genes table.
Old locus tagE6794_07845Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAWDYL010000004.1Sequence record reported by the local genomic context database.
Genomic interval279 465-280 496 nt1 032 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span276 228-280 496 ntGCF_032476635::NZ_JAWDYL010000004.1::G00019
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_032476635::NZ_JAWDYL010000004.1::G00019Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labeltriadNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAWDYL010000004.1All displayed genes belong to this local TCS context.
Neighborhood span276 228-280 496 nt4 269 nt
Members31 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
276 228 nt280 496 nt
Neighborhood gene cards
3 genes in the current local neighborhood.
E6794_RS07825GCF_032476635#E6794_RS07825
RRunclassified
276 228-277 007 nt · Reverse (-)
E6794_RS07835GCF_032476635#E6794_RS07835
HKHybrid
277 394-279 481 nt · Reverse (-)
E6794_RS07840GCF_032476635#E6794_RS07840
RRRpfGCurrent focus
279 465-280 496 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_032476635#E6794_RS07840The current gene is the representative for this cluster.
PFAM architectureResponse_reg + HD_52 domains in the representative PFAM annotation.
PFAM architecture for RROC_0496937
Simplified PFAM architecture for RROC_0496937
PFAM domain coverage: 270 / 343 aa (78.7%)
1 aa343 aa
Response_regHD_5
- Simplified architecture: Response_reg + HD_5
- Raw architecture: Response_reg[8-115] | HD_5[161-322]
- Domain count: 2
- Matched identifier: RROC_0496937
- Positioned domains: Response_reg 8-115 ; HD_5 161-322
Cluster members and taxonomy
Representative gene: GCF_032476635#E6794_RS07840
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 506 · GCF_032476635
AssemblyASM3247663v1 · Contighaploid
Genome composition3 707 048 bp · 30,0% GCClostridium sp.
Signal transduction countsGenes 74 · HK 38 · RR 34CheA 1 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyClostridiaceaeGenusClostridium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Clostridiaceae7Clostridium
Related genes
Preview from the same derived genome key