1 HisKA#1
321-383 aa · 63 aa · 9.1% of protein
Raw token
HisKA:321:0.000000000000242:383:63:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
E6794_RS07835
Histidine kinase, Hybrid
Clostridium sp. · GCF_032476635
ClassHKTypeHybridLength695 aaTM0ValidatedNoCompleteYesContexttriad
Gene IDGCF_032476635#E6794_RS07835Stable P2CS identifier used across views.
GenomeGCF_032476635Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Clostridiaceae; Clostridium
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_cResponse_reg
Protein length695 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage299 / 695 aa (43.0%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_c,1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa695 aa
Domain-by-domain annotation3 items
2 HATPase_c#2
435-552 aa · 118 aa · 17.0% of protein
Raw token
HATPase_c:435:1.11e-27:552:118:1093 Response_reg#3
575-692 aa · 118 aa · 17.0% of protein
Raw token
Response_reg:575:3.76e-18:692:119:111- Raw architecture: HisKA:321:0.000000000000242:383:63:64#HATPase_c:435:1.11e-27:552:118:109#Response_reg:575:3.76e-18:692:119:111
- Domain description: 1 HisKA,1 HATPase_c,1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labeltriadGCF_032476635::NZ_JAWDYL010000004.1::G00019
Group size33 locus tags listed below.
HK / RR1 / 2Counts resolved for the local TCS neighborhood.
Context span276228-280496Genomic interval covered by the local TCS group.
Identifiers
Old locus tagE6794_07840RefSeq proteinWP_316089476.1
Context group ID
GCF_032476635::NZ_JAWDYL010000004.1::G00019Context members
E6794_RS07825E6794_RS07835E6794_RS07840
Partner locus tags
E6794_RS07825E6794_RS07835E6794_RS07840
Partner old locus tags
E6794_07830E6794_07840E6794_07845
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_316089476.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagE6794_RS07835Primary locus identifier stored in the genes table.
Old locus tagE6794_07840Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAWDYL010000004.1Sequence record reported by the local genomic context database.
Genomic interval277 394-279 481 nt2 088 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span276 228-280 496 ntGCF_032476635::NZ_JAWDYL010000004.1::G00019
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_032476635::NZ_JAWDYL010000004.1::G00019Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labeltriadNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAWDYL010000004.1All displayed genes belong to this local TCS context.
Neighborhood span276 228-280 496 nt4 269 nt
Members31 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
276 228 nt280 496 nt
Neighborhood gene cards
3 genes in the current local neighborhood.
E6794_RS07825GCF_032476635#E6794_RS07825
RRunclassified
276 228-277 007 nt · Reverse (-)
E6794_RS07835GCF_032476635#E6794_RS07835
HKHybridCurrent focus
277 394-279 481 nt · Reverse (-)
E6794_RS07840GCF_032476635#E6794_RS07840
RRRpfG
279 465-280 496 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_032476635#E6794_RS07835The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c + Response_reg3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0781632
Simplified PFAM architecture for HKOC_0781632
PFAM domain coverage: 297 / 695 aa (42.7%)
1 aa695 aa
HisKAHATPase_cResponse_reg
- Simplified architecture: HisKA + HATPase_c + Response_reg
- Raw architecture: HisKA[322-384] | HATPase_c[435-551] | Response_reg[575-691]
- Domain count: 3
- Matched identifier: HKOC_0781632
- Positioned domains: HisKA 322-384 ; HATPase_c 435-551 ; Response_reg 575-691
Cluster members and taxonomy
Representative gene: GCF_032476635#E6794_RS07835
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 506 · GCF_032476635
AssemblyASM3247663v1 · Contighaploid
Genome composition3 707 048 bp · 30,0% GCClostridium sp.
Signal transduction countsGenes 74 · HK 38 · RR 34CheA 1 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyClostridiaceaeGenusClostridium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Clostridiaceae7Clostridium
Related genes
Preview from the same derived genome key