1 Response_reg#1
7-118 aa · 112 aa · 52.6% of protein
Raw token
Response_reg:7:2.64e-24:118:112:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
E6794_RS06020
Response regulator NarL family
Clostridium sp. · GCF_032476635
ClassRRTypeNarLLength213 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_032476635#E6794_RS06020Stable P2CS identifier used across views.
GenomeGCF_032476635Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Clostridiaceae; Clostridium
Domain signature
Compact overview inferred from the domain field
Response_regHTH_LUXR
Protein length213 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage168 / 213 aa (78.9%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_LUXRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa213 aa
Domain-by-domain annotation2 items
2 HTH_LUXR#2
151-206 aa · 56 aa · 26.3% of protein
Raw token
HTH_LUXR:151:2.44e-20:206:56:58- Raw architecture: Response_reg:7:2.64e-24:118:112:111#HTH_LUXR:151:2.44e-20:206:56:58
- Domain description: 1 Response_reg,1 HTH_LUXR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_032476635::NZ_JAWDYL010000003.1::G00017
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span219865-221661Genomic interval covered by the local TCS group.
Identifiers
Old locus tagE6794_06020RefSeq proteinWP_027097372.1
Context group ID
GCF_032476635::NZ_JAWDYL010000003.1::G00017Context members
E6794_RS06020E6794_RS06025
Partner locus tags
E6794_RS06020E6794_RS06025
Partner old locus tags
E6794_06020E6794_06025
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_027097372.1Primary protein accession used for annex mappings.
UniProt accessionA0A174BRZ8Primary UniProt accession resolved in the annex database.
UniProt IDA0A174BRZ8_9CLOTDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagE6794_RS06020Primary locus identifier stored in the genes table.
Old locus tagE6794_06020Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAWDYL010000003.1Sequence record reported by the local genomic context database.
Genomic interval219 865-220 506 nt642 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span219 865-221 661 ntGCF_032476635::NZ_JAWDYL010000003.1::G00017
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_032476635::NZ_JAWDYL010000003.1::G00017Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAWDYL010000003.1All displayed genes belong to this local TCS context.
Neighborhood span219 865-221 661 nt1 797 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
219 865 nt221 661 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
E6794_RS06020GCF_032476635#E6794_RS06020
RRNarLCurrent focus
219 865-220 506 nt · Reverse (-)
E6794_RS06025GCF_032476635#E6794_RS06025
HKClassic
220 510-221 661 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000424025#G594_RS0103935Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + GerE2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1963622
Simplified PFAM architecture for RROC_1963622
PFAM domain coverage: 164 / 213 aa (77.0%)
1 aa213 aa
Response_regGerE
- Simplified architecture: Response_reg + GerE
- Raw architecture: Response_reg[7-115] | GerE[152-206]
- Domain count: 2
- Matched identifier: RROC_1963622
- Positioned domains: Response_reg 7-115 ; Response_reg 7-115 ; GerE 152-206 ; GerE 152-206
Cluster members and taxonomy
Representative gene: GCF_000424025#G594_RS0103935
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 506 · GCF_032476635
AssemblyASM3247663v1 · Contighaploid
Genome composition3 707 048 bp · 30,0% GCClostridium sp.
Signal transduction countsGenes 74 · HK 38 · RR 34CheA 1 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyClostridiaceaeGenusClostridium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Clostridiaceae7Clostridium
Related genes
Preview from the same derived genome key