1 Response_reg#1
5-115 aa · 111 aa · 48.1% of protein
Raw token
Response_reg:5:6.16e-38:115:112:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
E6794_RS03130
Response regulator OmpR family
Clostridium sp. · GCF_032476635
ClassRRTypeOmpRLength231 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_032476635#E6794_RS03130Stable P2CS identifier used across views.
GenomeGCF_032476635Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Clostridiaceae; Clostridium
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length231 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage188 / 231 aa (81.4%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa231 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
152-228 aa · 77 aa · 33.3% of protein
Raw token
Trans_reg_C:152:1.93e-34:228:77:77- Raw architecture: Response_reg:5:6.16e-38:115:112:111#Trans_reg_C:152:1.93e-34:228:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_032476635::NZ_JAWDYL010000002.1::G00011
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span89582-91705Genomic interval covered by the local TCS group.
Identifiers
Old locus tagE6794_03135RefSeq proteinWP_027099369.1
Context group ID
GCF_032476635::NZ_JAWDYL010000002.1::G00011Context members
E6794_RS03130E6794_RS03135
Partner locus tags
E6794_RS03130E6794_RS03135
Partner old locus tags
E6794_03135E6794_03140
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_027099369.1Primary protein accession used for annex mappings.
UniProt accessionA0A173ZWW8Primary UniProt accession resolved in the annex database.
UniProt IDA0A173ZWW8_9CLOTDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagE6794_RS03130Primary locus identifier stored in the genes table.
Old locus tagE6794_03135Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAWDYL010000002.1Sequence record reported by the local genomic context database.
Genomic interval89 582-90 277 nt696 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span89 582-91 705 ntGCF_032476635::NZ_JAWDYL010000002.1::G00011
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_032476635::NZ_JAWDYL010000002.1::G00011Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAWDYL010000002.1All displayed genes belong to this local TCS context.
Neighborhood span89 582-91 705 nt2 124 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
89 582 nt91 705 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
E6794_RS03130GCF_032476635#E6794_RS03130
RROmpRCurrent focus
89 582-90 277 nt · Forward (+)
E6794_RS03135GCF_032476635#E6794_RS03135
HKClassic
90 284-91 705 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000424025#G594_RS0115480Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1159964
Simplified PFAM architecture for RROC_1159964
PFAM domain coverage: 188 / 231 aa (81.4%)
1 aa231 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[5-115] | Trans_reg_C[152-228]
- Domain count: 2
- Matched identifier: RROC_1159964
- Positioned domains: Response_reg 5-115 ; Response_reg 5-115 ; Trans_reg_C 152-228 ; Trans_reg_C 152-228
Cluster members and taxonomy
Representative gene: GCF_000424025#G594_RS0115480
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 506 · GCF_032476635
AssemblyASM3247663v1 · Contighaploid
Genome composition3 707 048 bp · 30,0% GCClostridium sp.
Signal transduction countsGenes 74 · HK 38 · RR 34CheA 1 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyClostridiaceaeGenusClostridium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Clostridiaceae7Clostridium
Related genes
Preview from the same derived genome key