1 HisKA#1
226-286 aa · 61 aa · 13.7% of protein
Raw token
HisKA:226:0.0000000000601:286:61:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
XC57_RS12265
Histidine kinase, Classic
Clostridioides difficile · GCF_032081865
ClassHKTypeClassicLength444 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_032081865#XC57_RS12265Stable P2CS identifier used across views.
GenomeGCF_032081865Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length444 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage161 / 444 aa (36.3%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa444 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
342-441 aa · 100 aa · 22.5% of protein
Raw token
HATPase_c:342:6.91e-25:441:100:109- Raw architecture: HisKA:226:0.0000000000601:286:61:64#HATPase_c:342:6.91e-25:441:100:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_032081865::NZ_LIFS01000110.1::G00033
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span218707-220718Genomic interval covered by the local TCS group.
Identifiers
Old locus tagXC57_12185RefSeq proteinWP_225548891.1
Context group ID
GCF_032081865::NZ_LIFS01000110.1::G00033Context members
XC57_RS12260XC57_RS12265
Partner locus tags
XC57_RS12260XC57_RS12265
Partner old locus tags
XC57_12180XC57_12185
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_225548891.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagXC57_RS12265Primary locus identifier stored in the genes table.
Old locus tagXC57_12185Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_LIFS01000110.1Sequence record reported by the local genomic context database.
Genomic interval219 384-220 718 nt1 335 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span218 707-220 718 ntGCF_032081865::NZ_LIFS01000110.1::G00033
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_032081865::NZ_LIFS01000110.1::G00033Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_LIFS01000110.1All displayed genes belong to this local TCS context.
Neighborhood span218 707-220 718 nt2 012 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
218 707 nt220 718 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
XC57_RS12260GCF_032081865#XC57_RS12260
RROmpR
218 707-219 414 nt · Forward (+)
XC57_RS12265GCF_032081865#XC57_RS12265
HKClassicCurrent focus
219 384-220 718 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000449985#QIK_RS13790Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2032570
Simplified PFAM architecture for HKOC_2032570
PFAM domain coverage: 166 / 444 aa (37.4%)
1 aa444 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[225-286] | HATPase_c[338-441]
- Domain count: 2
- Matched identifier: HKOC_2032570
- Positioned domains: HisKA 225-286 ; HATPase_c 338-441
Cluster members and taxonomy
Representative gene: GCF_000449985#QIK_RS13790
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_032081865
AssemblyASM3208186v1 · Scaffoldhaploid
Genome composition4 335 539 bp · 28,5% GCClostridioides difficile
Signal transduction countsGenes 102 · HK 48 · RR 54CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key