1 HisKA#1
1-58 aa · 58 aa · 26.7% of protein
Raw token
HisKA:1:0.000000000489:58:58:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
XC56_RS08150
Histidine kinase, Classic
Clostridioides difficile · GCF_032081845
ClassHKTypeClassicLength217 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_032081845#XC56_RS08150Stable P2CS identifier used across views.
GenomeGCF_032081845Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length217 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage168 / 217 aa (77.4%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa217 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
106-215 aa · 110 aa · 50.7% of protein
Raw token
HATPase_c:106:2.06e-18:215:110:109- Raw architecture: HisKA:1:0.000000000489:58:58:64#HATPase_c:106:2.06e-18:215:110:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_032081845::NZ_LIFR01000071.1::G00025
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span2368-3021Genomic interval covered by the local TCS group.
Identifiers
Old locus tagXC56_08145RefSeq proteinWP_313263048.1
Context group ID
GCF_032081845::NZ_LIFR01000071.1::G00025Context members
XC56_RS08150
Partner locus tags
XC56_RS08150
Partner old locus tags
XC56_08145
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_313263048.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagXC56_RS08150Primary locus identifier stored in the genes table.
Old locus tagXC56_08145Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_LIFR01000071.1Sequence record reported by the local genomic context database.
Genomic interval2 368-3 021 nt654 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span2 368-3 021 ntGCF_032081845::NZ_LIFR01000071.1::G00025
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_032081845::NZ_LIFR01000071.1::G00025Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_LIFR01000071.1All displayed genes belong to this local TCS context.
Neighborhood span2 368-3 021 nt654 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
2 368 nt3 021 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
XC56_RS08150GCF_032081845#XC56_RS08150
HKClassicCurrent focus
2 368-3 021 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000242355#MUI_RS0103550Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1737789
Simplified PFAM architecture for HKOC_1737789
PFAM domain coverage: 175 / 468 aa (37.4%)
1 aa468 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[245-310] | HATPase_c[358-466]
- Domain count: 2
- Matched identifier: HKOC_1737789
- Positioned domains: HisKA 245-310 ; HATPase_c 358-466
Cluster members and taxonomy
Representative gene: GCF_000242355#MUI_RS0103550
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_032081845
AssemblyASM3208184v1 · Scaffoldhaploid
Genome composition4 192 634 bp · 28,5% GCClostridioides difficile
Signal transduction countsGenes 106 · HK 49 · RR 55CheA 1 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key