1 Response_reg#1
3-112 aa · 110 aa · 48.2% of protein
Raw token
Response_reg:3:3e-32:112:110:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
XC41_RS08145
Response regulator OmpR family
Clostridioides difficile · GCF_032081545
ClassRRTypeOmpRLength228 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_032081545#XC41_RS08145Stable P2CS identifier used across views.
GenomeGCF_032081545Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length228 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage186 / 228 aa (81.6%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa228 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
147-222 aa · 76 aa · 33.3% of protein
Raw token
Trans_reg_C:147:1.61e-24:222:78:77- Raw architecture: Response_reg:3:3e-32:112:110:111#Trans_reg_C:147:1.61e-24:222:78:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_032081545::NZ_LIFC01000027.1::G00035
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span696454-698168Genomic interval covered by the local TCS group.
Identifiers
Old locus tagXC41_08160RefSeq proteinWP_256192389.1
Context group ID
GCF_032081545::NZ_LIFC01000027.1::G00035Context members
XC41_RS08145XC41_RS08150
Partner locus tags
XC41_RS08145XC41_RS08150
Partner old locus tags
XC41_08160XC41_08165
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_256192389.1Primary protein accession used for annex mappings.
UniProt accessionA0ABT1S3Y2Primary UniProt accession resolved in the annex database.
UniProt IDA0ABT1S3Y2_9FIRMDisplay identifier provided by UniProt.
GO / PubMed0 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagXC41_RS08145Primary locus identifier stored in the genes table.
Old locus tagXC41_08160Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_LIFC01000027.1Sequence record reported by the local genomic context database.
Genomic interval696 454-697 140 nt687 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span696 454-698 168 ntGCF_032081545::NZ_LIFC01000027.1::G00035
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_032081545::NZ_LIFC01000027.1::G00035Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_LIFC01000027.1All displayed genes belong to this local TCS context.
Neighborhood span696 454-698 168 nt1 715 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
696 454 nt698 168 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
XC41_RS08145GCF_032081545#XC41_RS08145
RROmpRCurrent focus
696 454-697 140 nt · Forward (+)
XC41_RS08150GCF_032081545#XC41_RS08150
HKClassic
697 137-698 168 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_024460865#NE546_RS17345Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1330523
Simplified PFAM architecture for RROC_1330523
PFAM domain coverage: 183 / 228 aa (80.3%)
1 aa228 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[3-111] | Trans_reg_C[148-221]
- Domain count: 2
- Matched identifier: RROC_1330523
- Positioned domains: Response_reg 3-111 ; Trans_reg_C 148-221
Cluster members and taxonomy
Representative gene: GCF_024460865#NE546_RS17345
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_032081545
AssemblyASM3208154v1 · Scaffoldhaploid
Genome composition4 179 985 bp · 28,5% GCClostridioides difficile
Signal transduction countsGenes 105 · HK 49 · RR 56CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key